\HeaderA{zzz-ARRCompatibility-class}{(Auto-generated) classes and methods for navigating ARR sample
attributes.}{zzz.Rdash.ARRCompatibility.Rdash.class}
\aliasA{affxComment,PhysicalArray-method}{zzz-ARRCompatibility-class}{affxComment,PhysicalArray.Rdash.method}
\aliasA{affyBarcode}{zzz-ARRCompatibility-class}{affyBarcode}
\aliasA{affyBarcode,PhysicalArray-method}{zzz-ARRCompatibility-class}{affyBarcode,PhysicalArray.Rdash.method}
\aliasA{arrayAttribute}{zzz-ARRCompatibility-class}{arrayAttribute}
\aliasA{arrayAttribute,PhysicalArray-method}{zzz-ARRCompatibility-class}{arrayAttribute,PhysicalArray.Rdash.method}
\aliasA{arrayName}{zzz-ARRCompatibility-class}{arrayName}
\aliasA{arrayName,PhysicalArray-method}{zzz-ARRCompatibility-class}{arrayName,PhysicalArray.Rdash.method}
\aliasA{control}{zzz-ARRCompatibility-class}{control}
\aliasA{control,UserAttribute-method}{zzz-ARRCompatibility-class}{control,UserAttribute.Rdash.method}
\aliasA{createdBy}{zzz-ARRCompatibility-class}{createdBy}
\aliasA{createdBy,ArraySetFile-method}{zzz-ARRCompatibility-class}{createdBy,ArraySetFile.Rdash.method}
\aliasA{createdBy,PhysicalArray-method}{zzz-ARRCompatibility-class}{createdBy,PhysicalArray.Rdash.method}
\aliasA{createdBy,TemplateFile-method}{zzz-ARRCompatibility-class}{createdBy,TemplateFile.Rdash.method}
\aliasA{createdDateTime}{zzz-ARRCompatibility-class}{createdDateTime}
\aliasA{createdDateTime,ArraySetFile-method}{zzz-ARRCompatibility-class}{createdDateTime,ArraySetFile.Rdash.method}
\aliasA{createdDateTime,PhysicalArray-method}{zzz-ARRCompatibility-class}{createdDateTime,PhysicalArray.Rdash.method}
\aliasA{createdDateTime,TemplateFile-method}{zzz-ARRCompatibility-class}{createdDateTime,TemplateFile.Rdash.method}
\aliasA{createdStep}{zzz-ARRCompatibility-class}{createdStep}
\aliasA{createdStep,ArraySetFile-method}{zzz-ARRCompatibility-class}{createdStep,ArraySetFile.Rdash.method}
\aliasA{createdStep,PhysicalArray-method}{zzz-ARRCompatibility-class}{createdStep,PhysicalArray.Rdash.method}
\aliasA{defaultValue}{zzz-ARRCompatibility-class}{defaultValue}
\aliasA{defaultValue,UserAttribute-method}{zzz-ARRCompatibility-class}{defaultValue,UserAttribute.Rdash.method}
\aliasA{guid}{zzz-ARRCompatibility-class}{guid}
\aliasA{guid,ArraySetFile-method}{zzz-ARRCompatibility-class}{guid,ArraySetFile.Rdash.method}
\aliasA{guid,PhysicalArray-method}{zzz-ARRCompatibility-class}{guid,PhysicalArray.Rdash.method}
\aliasA{guid,TemplateFile-method}{zzz-ARRCompatibility-class}{guid,TemplateFile.Rdash.method}
\aliasA{libraryPackageName}{zzz-ARRCompatibility-class}{libraryPackageName}
\aliasA{libraryPackageName,PhysicalArray-method}{zzz-ARRCompatibility-class}{libraryPackageName,PhysicalArray.Rdash.method}
\aliasA{masterFileGUID}{zzz-ARRCompatibility-class}{masterFileGUID}
\aliasA{masterFileGUID,PhysicalArray-method}{zzz-ARRCompatibility-class}{masterFileGUID,PhysicalArray.Rdash.method}
\aliasA{masterFileName}{zzz-ARRCompatibility-class}{masterFileName}
\aliasA{masterFileName,PhysicalArray-method}{zzz-ARRCompatibility-class}{masterFileName,PhysicalArray.Rdash.method}
\aliasA{mediaCol}{zzz-ARRCompatibility-class}{mediaCol}
\aliasA{mediaCol,PhysicalArray-method}{zzz-ARRCompatibility-class}{mediaCol,PhysicalArray.Rdash.method}
\aliasA{mediaFileGUID}{zzz-ARRCompatibility-class}{mediaFileGUID}
\aliasA{mediaFileGUID,PhysicalArray-method}{zzz-ARRCompatibility-class}{mediaFileGUID,PhysicalArray.Rdash.method}
\aliasA{mediaFileName}{zzz-ARRCompatibility-class}{mediaFileName}
\aliasA{mediaFileName,PhysicalArray-method}{zzz-ARRCompatibility-class}{mediaFileName,PhysicalArray.Rdash.method}
\aliasA{mediaRow}{zzz-ARRCompatibility-class}{mediaRow}
\aliasA{mediaRow,PhysicalArray-method}{zzz-ARRCompatibility-class}{mediaRow,PhysicalArray.Rdash.method}
\aliasA{mediaType}{zzz-ARRCompatibility-class}{mediaType}
\aliasA{mediaType,PhysicalArray-method}{zzz-ARRCompatibility-class}{mediaType,PhysicalArray.Rdash.method}
\aliasA{name,ArrayAttribute-method}{zzz-ARRCompatibility-class}{name,ArrayAttribute.Rdash.method}
\aliasA{name,UserAttribute-method}{zzz-ARRCompatibility-class}{name,UserAttribute.Rdash.method}
\aliasA{namespace}{zzz-ARRCompatibility-class}{namespace}
\aliasA{namespace,UserAttribute-method}{zzz-ARRCompatibility-class}{namespace,UserAttribute.Rdash.method}
\aliasA{originalProjectName}{zzz-ARRCompatibility-class}{originalProjectName}
\aliasA{originalProjectName,ArraySetFile-method}{zzz-ARRCompatibility-class}{originalProjectName,ArraySetFile.Rdash.method}
\aliasA{patassignmentMethod}{zzz-ARRCompatibility-class}{patassignmentMethod}
\aliasA{patassignmentMethod,PhysicalArray-method}{zzz-ARRCompatibility-class}{patassignmentMethod,PhysicalArray.Rdash.method}
\aliasA{physicalArray}{zzz-ARRCompatibility-class}{physicalArray}
\aliasA{physicalArray,PhysicalArrays-method}{zzz-ARRCompatibility-class}{physicalArray,PhysicalArrays.Rdash.method}
\aliasA{physicalArrays}{zzz-ARRCompatibility-class}{physicalArrays}
\aliasA{physicalArrays,ArraySetFile-method}{zzz-ARRCompatibility-class}{physicalArrays,ArraySetFile.Rdash.method}
\aliasA{required}{zzz-ARRCompatibility-class}{required}
\aliasA{required,UserAttribute-method}{zzz-ARRCompatibility-class}{required,UserAttribute.Rdash.method}
\aliasA{type,ArraySetFile-method}{zzz-ARRCompatibility-class}{type,ArraySetFile.Rdash.method}
\aliasA{type,PhysicalArray-method}{zzz-ARRCompatibility-class}{type,PhysicalArray.Rdash.method}
\aliasA{type,TemplateFile-method}{zzz-ARRCompatibility-class}{type,TemplateFile.Rdash.method}
\aliasA{type,UserAttribute-method}{zzz-ARRCompatibility-class}{type,UserAttribute.Rdash.method}
\aliasA{userAttribute}{zzz-ARRCompatibility-class}{userAttribute}
\aliasA{userAttribute,UserAttributes-method}{zzz-ARRCompatibility-class}{userAttribute,UserAttributes.Rdash.method}
\aliasA{userAttributes}{zzz-ARRCompatibility-class}{userAttributes}
\aliasA{userAttributes,ArraySetFile-method}{zzz-ARRCompatibility-class}{userAttributes,ArraySetFile.Rdash.method}
\aliasA{userAttributes,TemplateFile-method}{zzz-ARRCompatibility-class}{userAttributes,TemplateFile.Rdash.method}
\aliasA{userAttributeValue}{zzz-ARRCompatibility-class}{userAttributeValue}
\aliasA{userAttributeValue,UserAttribute-method}{zzz-ARRCompatibility-class}{userAttributeValue,UserAttribute.Rdash.method}
\aliasA{value}{zzz-ARRCompatibility-class}{value}
\aliasA{value,Control-method}{zzz-ARRCompatibility-class}{value,Control.Rdash.method}
\aliasA{version}{zzz-ARRCompatibility-class}{version}
\aliasA{version,ArraySetFile-method}{zzz-ARRCompatibility-class}{version,ArraySetFile.Rdash.method}
\aliasA{version,TemplateFile-method}{zzz-ARRCompatibility-class}{version,TemplateFile.Rdash.method}
\keyword{classes}{zzz-ARRCompatibility-class}
\begin{Description}\relax
These classes and methods facilitate navigation of the Affymetrix ARR
sample attribute files. ARR files are generated by the Affymetrix AGCC
(GeneChip(R) Command Console) application. Specifically, the classes
are R representations of the Affymetrix classes defined in
ArraySetAndTemplateFile.dtd. The 'show' methods for these classs
indicate how objects are to be accessed; details are in the
`Retrieving MAGE and ARR sample attributes' vignette.
\end{Description}
\begin{Section}{Objects from the Class}
Objects are created internally, by parsing XML retrieved from ARR, and
are not created directly by the user.
\end{Section}
\begin{Section}{Slots}
Objects have a variety of slots. To discover slot names and content
type, see the \code{slotNames} portion of the example, below.
\end{Section}
\begin{Section}{Extends}
Class \code{"\LinkA{ARRCompatibility}{ARRCompatibility.Rdash.class}"}, directly.
Class \code{"\LinkA{AffyCompatible}{AffyCompatible.Rdash.class}"}, by class "ARRCompatibility", distance 2.
\end{Section}
\begin{Section}{Methods}
'Accessor' methods are defined on auto-generated classes to access slot
content.

Accessors are apparent from displaying the object; each line of the
display is of the form \code{accessor: content}. To retrieve the
content of an instance \code{object}, invoke \code{accessor(object)}.

Some objects contains several instances of another object. These
'typed associations' are represented by the
\code{\LinkA{.TypedAssociation}{.TypedAssociation.Rdash.class}} class, and are navigated or
subset as one would a standard R vector, e.g., using \code{[},
\code{[[}. A useful paradigm for displaying all instances is
illustrated in the vignette.
\end{Section}
\begin{Author}\relax
Martin Morgan \textless{}mtmorgan@fhcrc.org\textgreater{}
\end{Author}
\begin{SeeAlso}\relax
Vignette `Retrieving MAGE and ARR sample attributes'.
\end{SeeAlso}
\begin{Examples}
\begin{ExampleCode}
## defined and auto-generated classes
names(slot(getClass("ARRCompatibility",
                    where=getNamespace("AffyCompatible")),
           "subclasses"))

\end{ExampleCode}
\end{Examples}

