AffymetrixDataTestFiles-packagepackage:AffymetrixDataTestFilesR Documentation

_P_a_c_k_a_g_e _A_f_f_y_m_e_t_r_i_x_D_a_t_a_T_e_s_t_F_i_l_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     This package contains annotation data files and sample data files
     of Affymetrix file formats.  The files originate from the
     Affymetrix' Fusion SDK distribution. This package contains only
     data files.

_R_e_q_u_i_r_e_m_e_n_t_s:

     None.

_I_n_s_t_a_l_l_a_t_i_o_n:

     To install this package, see <URL: http://www.bioconductor.org/>.

_L_o_c_a_t_i_o_n _o_f _d_a_t_a _f_i_l_e_s:

     Data files are located in two different directory tree depending
     if they are annotation data files or sample data files. The roots
     of these two directory structures are:


          system.file("annotationData",
     package="AffymetrixDataTestFiles")
          system.file("rawData", package="AffymetrixDataTestFiles")

     Where applicable, ASCII, XDA, and Calvin files are separated in
     different subdirectories for easy access to either type.

     Directory structure:


        annotationData/
         chipTypes/
           HG-Focus/
             +-HG-Focus.PSI
             3.ASCII/
               +-HG-Focus.CDF
           Mapping10K_Xba131/
             1.XDA/
               +-Mapping10K_Xba131.CDF
             3.ASCII/
               +-Mapping10K_Xba131.CDF
           Test3/
             +-Test3.PSI
             1.XDA/
               +-Test3.CDF
             3.ASCII/
               +-Test3.CDF
       rawData/
         FusionSDK_HG-Focus/
           HG-Focus/
             +-HG-Focus-1-121502.EXP
             +-HG-Focus-2-121502.EXP
             1.XDA/
               +-HG-Focus-1-121502.CHP
               +-HG-Focus-2-121502.CHP
             2.Calvin/
               +-HG-Focus-1-121502.CEL
               +-HG-Focus-1-121502.CHP
               +-HG-Focus-2-121502.CEL
               +-HG-Focus-2-121502.CHP
             3.ASCII/
               +-HG-Focus-1-121502.CEL
               +-HG-Focus-2-121502.CEL
         FusionSDK_HG-U133A/
           HG-U133A/
             2.Calvin/
               +-ethan1-1.CEL
         FusionSDK_Test3/
           Test3/
             +-Test3-1-121502.EXP
             +-Test3-2-121502.EXP
             1.XDA/
               +-Test3-1-121502.CHP
               +-Test3-2-121502.CHP
             2.Calvin/
               +-Test3-1-121502.CEL
               +-Test3-1-121502.CHP
               +-Test3-2-121502.CEL
               +-Test3-2-121502.CHP
             3.ASCII/
               +-Test3-1-121502.CEL
               +-Test3-2-121502.CEL


_L_i_c_e_n_s_e:

     LGPL version 2.1 according to [1].

_A_u_t_h_o_r(_s):

     Adopted from [1] by Henrik Bengtsson, hb@stat.berkeley.edu, James
     Bullard, bullard@stat.berkeley.edu and Kasper Daniel Hansen,
     khansen@stat.berkeley.edu.

_R_e_f_e_r_e_n_c_e_s:

     [1] Affymetrix Inc, Fusion Software Developers Kit (SDK), 2007.
     <URL: http://www.affymetrix.com/support/developer/fusion/>

