MIPSGS {yeastGSData} | R Documentation

## MIPS Gold Standard Protein Interactions

### Description

The MIPS gold standard protein complex data set downloaded from the Gerstein Lab web site.

### Usage

    data(MIPSGS)

### Format

A data frame with 8617 observations on the following 5 variables.

`ORF1`
  The ORF for one gene
`ORF2`
  The ORF for the second gene
`CID`
  The MIPS protein complex ID
`NAME`
  The name of the complex.
`NUMBER`
  The number of proteins in the complex.

### Details

The data are essentially multiprotein complexes, curated from MIPS data, see also the data set in `Mpact`, which is related.

The data are all pairwise members of each complex.

Yu et al. state “ To compile a reference data set with the lowest false-positive rate, we consider two proteins as interaction part- ners if and only if they are in the same complex of the highest level in the catalog. ”

### Source

http://interolog.gersteinlab.org

### References

Annotation Transfer Between Genomes: Protein-Protein Interologs and Protein-DNA Regulogs, H. Yu et al, Genome Research, 1107-1118, 2004.

### Examples

    data(MIPSGS)

[Package yeastGSData version 0.1.1 Index]