NEGGS              package:yeastGSData              R Documentation

_A _G_o_l_d _S_t_a_n_d_a_r_d _f_o_r _N_e_g_a_t_i_v_e _I_n_t_e_r_a_c_t_i_o_n_s

_D_e_s_c_r_i_p_t_i_o_n:

     These data were supplied as supplementary material, for the paper
     below, as  a data set for negative interactions.

_U_s_a_g_e:

     data(NEGGS)

_F_o_r_m_a_t:

     A data frame with 2708746 observations on the following 4
     variables.

     '_O_R_F_1' The ORF of one interactor.

     '_O_R_F_2' The ORF of the second interactor.

     '_L_O_C_1' A description of where the first interactor is  (typically)
          located in the cell. 

     '_L_O_C_2' A description of where the first interactor is  (typically)
          located in the cell. 

_D_e_t_a_i_l_s:

     The data are potentially problematic, since not being in the same
     cellular component does not mean that two proteins will not
     interact in some particular assay.

     Only a very broad grouping of location is given, and one may want
     to refer to a more recent and potentially more authoratative
     source.

_S_o_u_r_c_e:

     <URL: http://interolog.gersteinlab.org>

_R_e_f_e_r_e_n_c_e_s:

     Annotation Transfer Between Genomes: Protein-Protein Interologs
     and Protein-DNA Regulogs, H. Yu et al, Genome Research, 1107-1118,
     2004.

_E_x_a_m_p_l_e_s:

     data(NEGGS)
     table(NEGGS$LOC1)
     table(NEGGS$LOC2)

