NEGGS {yeastGSData} | R Documentation

## A Gold Standard for Negative Interactions

### Description

These data were supplied as supplementary material, for the paper below, as a data set for negative interactions.

### Usage

    data(NEGGS)

### Format

A data frame with 2708746 observations on the following 4 variables.

`ORF1`
  The ORF of one interactor.
`ORF2`
  The ORF of the second interactor.
`LOC1`
  A description of where the first interactor is (typically) located in the cell.
`LOC2`
  A description of where the first interactor is (typically) located in the cell.

### Details

The data are potentially problematic, since not being in the same cellular component does not mean that two proteins will not interact in some particular assay.

Only a very broad grouping of location is given, and one may want to refer to a more recent and potentially more authoratative source.

### Source

http://interolog.gersteinlab.org

### References

Annotation Transfer Between Genomes: Protein-Protein Interologs and Protein-DNA Regulogs, H. Yu et al, Genome Research, 1107-1118, 2004.

### Examples

    data(NEGGS)
    table(NEGGS$LOC1)
    table(NEGGS$LOC2)

[Package yeastGSData version 0.1.1 Index]