\HeaderA{MIPSGS}{MIPS Gold Standard Protein Interactions}{MIPSGS}
\keyword{datasets}{MIPSGS}
\begin{Description}\relax
The MIPS gold standard protein complex data set downloaded from the 
Gerstein Lab web site.
\end{Description}
\begin{Usage}
\begin{verbatim}data(MIPSGS)\end{verbatim}
\end{Usage}
\begin{Format}\relax
A data frame with 8617 observations on the following 5 variables.
\describe{
\item[\code{ORF1}] The ORF for one gene
\item[\code{ORF2}] The ORF for the second gene
\item[\code{CID}] The MIPS protein complex ID
\item[\code{NAME}] The name of the complex.
\item[\code{NUMBER}] The number of proteins in the complex.
}
\end{Format}
\begin{Details}\relax
The data are essentially multiprotein complexes, curated from MIPS data,
see also the data set in \code{\LinkA{Mpact}{Mpact}}, which is related.

The data are all pairwise members of each complex.

Yu et al. state \dQuote{ To compile a reference data set with the lowest 
false-positive rate, we consider two proteins as interaction part- 
ners if and only if they are in the same complex of the highest 
level in the catalog. }
\end{Details}
\begin{Source}\relax
\url{http://interolog.gersteinlab.org}
\end{Source}
\begin{References}\relax
Annotation Transfer Between Genomes: 
Protein-Protein Interologs and Protein-DNA Regulogs,
H. Yu et al, Genome Research, 1107-1118, 2004.
\end{References}
\begin{Examples}
\begin{ExampleCode}
data(MIPSGS)
\end{ExampleCode}
\end{Examples}

