neveCGHmatch            package:Neve2006            R Documentation

_N_e_v_e _C_a_n_c_e_r _C_e_l_l _2_0_0_6 _e_x_p_r_e_s_s_i_o_n _p_l_u_s _C_G_H _d_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     ExpressionSet and cghSet

_U_s_a_g_e:

     data(neveCGHmatch)
     data(neveRMAmatch)
     data(neveExCGH)

_F_o_r_m_a_t:

     The individual datasets (aCGH and expression assays) take the form
     of a cghSet for neveCGHmatch and an ExpressionSet for
     neveRMAmatch.  There are only 50 samples because only 50 could be
     aligned on the given sample name tokens in the caArrayDB data as
     of June 9 2007. Those sample name tokens are very mangled in the
     CEL files.

     The combined data structure 'neveExCGH' has a special container
     class 'cghExSet'.

_S_o_u_r_c_e:

     links are provided in the pdf of the Cancer Cell paper; see the
     PMID of 'experimentData(neveCGHmatch)'

_R_e_f_e_r_e_n_c_e_s:

     PMID 17157791

_E_x_a_m_p_l_e_s:

     data(neveCGHmatch)
     neveCGHmatch
     logRatios(neveCGHmatch)[1:4,1:4]
     data(neveRMAmatch)
     neveRMAmatch

