Package: trigger
Type: Package
Title: Transcriptional Regulatory Inference from Genetics of Gene
        ExpRession
Version: 1.10.0
Date: 2011-12-05
Author: Lin S. Chen <lchen@health.bsd.uchicago.edu>, Dipen P. Sangurdekar <dps@genomics.princeton.edu> and John D. Storey <jstorey@princeton.edu>
Maintainer: John D. Storey <jstorey@princeton.edu>
Depends: R (>= 2.14.0), corpcor, qtl
Imports: qvalue, methods, graphics, sva
Description: This R package provides tools for the statistical analysis of integrative genomic data that involve some combination of: genotypes, high-dimensional intermediate traits (e.g., gene expression, protein abundance), and higher-order traits (phenotypes). The package includes functions to: (1) construct global linkage maps between genetic markers and gene expression; (2) analyze multiple-locus linkage (epistasis) for gene expression; (3) quantify the proportion of genome-wide variation explained by each locus and identify eQTL hotspots; (4) estimate pair-wise causal gene regulatory probabilities and construct gene regulatory networks; and (5) identify causal genes for a quantitative trait of interest. 
biocViews: GeneExpression, SNP, GeneticVariability, Microarray,
        Genetics
Lazyload: no
License: GPL-3
Packaged: 2014-04-12 09:50:40 UTC; biocbuild
Built: R 3.1.0; i386-w64-mingw32; 2014-04-12 17:43:40 UTC; windows
Archs: i386, x64
