# Statistical Testing for ChIP-Seq data sets

## Documentation for package ‘MMDiff’ version 1.4.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

MMDiff-package | Statistical Testing for ChIP-Seq data sets
Cfp1Dists | Example DBA object used to illustrate usage of the MMDiff package
Cfp1Profiles | Example DBA object used to illustrate usage of the MMDiff package
compHistDists | Compute distances between pairs of histograms
detPeakPvals | Compute p-values for each peak based on distances between histograms
findOutliers | Find peaks with extreme count values
getNormFactors | Determine Normalisation factors
getPeakProfiles | Add histograms (binned read enrichment profiles) to an existing DBA object
MMDiff | Statistical Testing for ChIP-Seq data sets
plotHistDists | plot MMD distances
plotPeak | plot read enrichment profiles at a specific peak for all specified samples.