Package: COMPASS
Type: Package
Title: Combinatorial Polyfunctionality Analysis of Single Cells
Version: 1.2.1
Date: 2014-02-11
Authors@R: c( person("Lynn", "Lin", role="aut", email="llin@fhcrc.org"),
    person("Kevin", "Ushey", role=c("aut", "cre"), email="kushey@fhcrc.org"),
    person("Greg", "Finak", role="aut", email="gfinak@fhcrc.org"),
    person("Raivo", "Kolde", role="ctb", email="rkolde@gmail.com",
    comment="Author of 'pheatmap', which was modified and now used internally
    in COMPASS") )
Description: COMPASS is a statistical framework that enables unbiased analysis
    of antigen-specific T-cell subsets. COMPASS uses a Bayesian hierarchical
    framework to model all observed cell-subsets and select the most likely
    to be antigen-specific while regularizing the small cell counts that often
    arise in multi-parameter space. The model provides a posterior probability
    of specificity for each cell subset and each sample, which can be used to
    profile a subject's immune response to external stimuli such as infection
    or vaccination.
License: Artistic-2.0
BugReports: https://github.com/RGLab/COMPASS/issues
VignetteBuilder: knitr
Depends: R (>= 3.0.2)
LinkingTo: Rcpp (>= 0.11.0)
Imports: Rcpp, data.table, RColorBrewer, scales, grid, plyr, knitr,
        abind, clue, grDevices, utils
Suggests: flowWorkspace (>= 3.9.66), shiny, testthat, devtools, Kmisc
LazyLoad: yes
LazyData: yes
biocViews: FlowCytometry
Packaged: 2014-05-10 11:29:16 UTC; biocbuild
Author: Lynn Lin [aut],
  Kevin Ushey [aut, cre],
  Greg Finak [aut],
  Raivo Kolde [ctb] (Author of 'pheatmap', which was modified and now
    used internally in COMPASS)
Maintainer: Kevin Ushey <kushey@fhcrc.org>
Built: R 3.1.0; i386-w64-mingw32; 2014-05-10 13:20:11 UTC; windows
Archs: i386, x64
