# Addon to CellNOptR: Fuzzy Logic

## Documentation for package ‘CNORfuzzy’ version 1.6.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

CNORfuzzy-package | R version of CNOFuzzy, a Constrained Fuzzy Logic Network Optimisation
CNORfuzzy | R version of CNOFuzzy, a Constrained Fuzzy Logic Network Optimisation
CNORwrapFuzzy | CNORfuzzy analysis wrapper
compileMultiRes | Compiles results from multiple runs and produces graph for choosing Post Refinement Threshold
computeScoreFuzzy | Compute Score of a model compared to the data for a given intString.
defaultParametersFuzzy | Create a list of default parameters
gaDiscreteT1 | Genetic algorithm used to optimise a cFL model
getRefinedModel | Refinement of Parameters of cFL model
interpretDiscreteGA | Interpreter of output of discrete genetic algorithm
plotMeanFuzzyFit | Simulates models returned from multiple cFL runs and plots mean fit to data
prep4simFuzzy | Prepare a model for simulation
reduceFuzzy | Remove unnecessary interactions from cFL model
simFuzzyT1 | Simulation of a cFL model
writeFuzzyNetwork | Despict the network results of training a cFL model to data in multiple runs.