Package: BitSeq
Type: Package
Depends: Rsamtools, zlibbioc
Imports: IRanges
LinkingTo: Rsamtools, zlibbioc
Suggests: edgeR, DESeq
Title: Transcript expression inference and differential expression
        analysis for RNA-seq data
Version: 1.8.0
Date: 2013-10-12
Author: Peter Glaus, Antti Honkela and Magnus Rattray
Maintainer: Peter Glaus <glaus@cs.man.ac.uk>
Description: The BitSeq package is targeted for transcript expression
        analysis and differential expression analysis of RNA-seq data
        in two stage process. In the first stage it uses Bayesian
        inference methodology to infer expression of individual
        transcripts from individual RNA-seq experiments. The second
        stage of BitSeq embraces the differential expression analysis
        of transcript expression. Providing expression estimates from
        replicates of multiple conditions, Log-Normal model of the
        estimates is used for inferring the condition mean transcript
        expression and ranking the transcripts based on the likelihood
        of differential expression.
License: Artistic-2.0 + file LICENSE
Packaged: 2014-04-12 09:59:00 UTC; biocbuild
biocViews: GeneExpression, DifferentialExpression, Sequencing, RNASeq
Built: R 3.1.0; i386-w64-mingw32; 2014-04-12 11:50:18 UTC; windows
Archs: i386, x64
