Package: ASSIGN
Type: Package
Title: Adaptive Signature Selection and InteGratioN (ASSIGN)
Version: 1.0.0
Date: 2013-09-29
Author: Ying Shen, Andrea H. Bild, and W. Evan Johnson
Maintainer: Ying Shen <yshen3@bu.edu>
Depends: Rlab, msm, gplots
Description: ASSIGN is a computational tool to evaluate the pathway
        deregulation/activation status in individual patient samples.
        ASSIGN employs a flexible Bayesian factor analysis approach
        that adapts predetermined pathway signatures derived either
        from knowledge-based literatures or from perturbation
        experiments to the cell-/tissue-specific pathway signatures.
        The deregulation/activation level of each context-specific
        pathway is quantified to a score, which represents the extent
        to which a patient sample encompasses the pathway
        deregulation/activation signature.
License: MIT
Imports: graphics, grDevices, stats, utils
biocViews: Software, GeneExpression, Pathways, Bayesian
Packaged: 2014-04-12 10:45:16 UTC; biocbuild
Built: R 3.1.0; ; 2014-04-12 11:29:23 UTC; windows
