Package: minfi
Version: 1.8.9
Title: Analyze Illumina's 450k methylation arrays
Description: Tools for analyzing and visualizing Illumina's 450k array data
Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
                    email = "khansen@jhsph.edu"),
             person("Martin", "Ayree", role = "aut"),
             person(c("Rafael", "A."), "Irizarry", role = "aut"),
	     person(c("Andrew", "E."), "Jaffe", role = "ctb"),
	     person("Jovana", "Maksimovic", role = "ctb"),
             person(c("E.", "Andres"), "Houseman", role = "ctb"))
Depends: methods, BiocGenerics (>= 0.3.2), Biobase (>= 2.17.8),
        lattice, reshape, GenomicRanges, Biostrings, utils, bumphunter
        (>= 1.1.9)
Suggests: IlluminaHumanMethylation450kmanifest (>= 0.2.0),
        IlluminaHumanMethylation450kanno.ilmn12.hg19, minfiData (>=
        0.4.1), quadprog, FlowSorted.Blood.450k (>= 1.0.1), RUnit,
        digest
Imports: IRanges, beanplot, RColorBrewer, nor1mix, siggenes, limma,
        preprocessCore, illuminaio, matrixStats, mclust, genefilter,
        nlme
Collate: generics.R mset.R rset.R rgset.R gmset.R grset.R utils.R
        manifest.R anno.R minfiQC.R getSex.R dmr.R blocks.R plot.R
        plotBetasByType.R preprocess.R preprocessSwan.R
        preprocessQuantile.R qc.R read.450k.R read.manifest.R
        bumphunter.R estimateCellCounts.R
License: Artistic-2.0
LazyData: yes
biocViews: DNAMethylation, Microarray, TwoChannel, DataImport,
        Preprocessing, QualityControl
Packaged: 2013-12-05 08:52:20 UTC; biocbuild
Author: Kasper Daniel Hansen [cre, aut],
  Martin Ayree [aut],
  Rafael A. Irizarry [aut],
  Andrew E. Jaffe [ctb],
  Jovana Maksimovic [ctb],
  E. Andres Houseman [ctb]
Maintainer: Kasper Daniel Hansen <khansen@jhsph.edu>
Built: R 3.0.2; ; 2013-12-05 16:06:34 UTC; windows
