# detect different methylation level (DMR)

## Documentation for package ‘methylMnM’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

methylMnM-package | MeDIP-Seq and MRE-Seq data analysis
calcFactornew | Normalization factor.
calculatecount | Call C programs to R.
calculatecount1 | Call C programs to R.
calculatecountneg | Call C programs to R.
CNVnormal | Normalize copy number variation (CNV).
countcpgbin | Compute the total CpG number of each bin with each CpG site.
countMeDIPbin | Compute the total MeDIP-seq number of each bin.
countMREbin | Compute the total MRE-seq number of each bin.
countMREcpgbin | Compute the MRE CpG number of each bin with MRE CpG sites.
cpgcount | Call C programs to R.
methylMnM | MeDIP-Seq and MRE-Seq data analysis
MnM.qvalue | Estimate the q-values for a given set of p-values
MnM.selectDMR | Select significants of each comparation.
MnM.test | Compute p-value of each bin.
normpdf | Compute p-value with normal distribution.
normpdft1 | Compute p-value with normal distribution.
pmultinom | Call C programs to R.
qvalue.rank | Rank values.
removeblacklist | Remove blacklist.