Package: lumi
Type: Package
Title: BeadArray Specific Methods for Illumina Methylation and
        Expression Microarrays
Version: 2.14.2
Date: 2014-02-25
Depends: R (>= 2.10), Biobase (>= 2.5.5)
Imports: affy (>= 1.23.4), methylumi (>= 2.3.2), GenomicFeatures,
        GenomicRanges, annotate, Biobase (>= 2.5.5), lattice, mgcv (>=
        1.4-0), nleqslv, KernSmooth, preprocessCore, RSQLite, DBI,
        AnnotationDbi, MASS, graphics, stats, stats4, methods
Suggests: beadarray, limma, vsn, lumiBarnes, lumiHumanAll.db,
        lumiHumanIDMapping, genefilter, RColorBrewer
Author: Pan Du, Richard Bourgon, Gang Feng, Simon Lin
Maintainer: Pan Du <dupan.mail@gmail.com>
Description: The lumi package provides an integrated solution for the Illumina microarray data analysis. It includes functions of Illumina BeadStudio (GenomeStudio) data input, quality control, BeadArray-specific variance stabilization, normalization and gene annotation at the probe level. It also includes the functions of processing Illumina methylation microarrays, especially Illumina Infinium methylation microarrays.
License: LGPL (>= 2)
LazyLoad: yes
biocViews: Microarray, OneChannel, Preprocessing, DNAMethylation,
        QualityControl, TwoChannel
Packaged: 2014-02-28 08:00:52 UTC; biocbuild
Built: R 3.0.2; ; 2014-02-28 12:43:43 UTC; windows
