genoset-package	genoset-package
baf	baf
baf,BAFSet-method	baf
baf2mbaf	baf2mbaf
baf<-	baf
baf<-,BAFSet,matrix-method	baf
BAFSet	BAFSet
BAFSet-class	BAFSet-class
BAFSet-defunct	BAFSet
BAFSet.to.ExpressionSets	BAFSet.to.ExpressionSets
BAFSet.to.ExpressionSets-defunct	BAFSet.to.ExpressionSets
boundingIndices	boundingIndices
boundingIndices2	boundingIndices2
boundingIndicesByChr	boundingIndicesByChr
bounds2Rle	bounds2Rle
calcGC	calcGC
chr	chr-methods
chr,GenoSet-method	chr-methods
chr,GRanges-method	chr-methods
chr,RangedData-method	chr-methods
chrIndices	chrIndices-methods
chrIndices,RangedDataOrGenoSetOrGenomicRanges-method	chrIndices-methods
chrInfo	chrInfo
chrInfo,RangedDataOrGenoSetOrGenomicRanges-method	chrInfo
chrNames	chrNames
chrNames,GenoSet-method	chrNames
chrNames,GRanges-method	chrNames
chrNames,RangedData-method	chrNames
chrNames<-	chrNames
chrNames<-,GenoSet-method	chrNames
chrNames<-,GRanges-method	chrNames
chrNames<-,RangedData-method	chrNames
chrOrder	chrOrder
cn	cn
cn,CNSet-method	cn
cn2lr	cn2lr
cn<-	cn
cn<-,CNSet,matrix-method	cn
CNSet	CNSet
CNSet-class	CNSet-class
CNSet-defunct	CNSet
colMeans	colMeans
colMeans,DataFrame-method	colMeans
colnames	colnames
colnames,GenoSet-method	colnames
dim	genoset-methods
dim,GenoSet-method	genoset-methods
elementLengths	genoset-methods
elementLengths,GenoSet-method	genoset-methods
elementLengths,GRanges-method	genoset-methods
end	genoset-methods
end,GenoSet-method	genoset-methods
fake.baf	genoset-dataset
fake.cn	genoset-dataset
fake.lrr	genoset-dataset
fake.pData	genoset-dataset
featureNames	rownames
featureNames,GenoSet-method	rownames
featureNames,GRanges-method	rownames
featureNames,RangedData-method	rownames
featureNames<-	rownames
featureNames<-,GenoSet-method	rownames
featureNames<-,GRanges-method	rownames
featureNames<-,RangedData-method	rownames
fixSegNAs	fixSegNAs
gcCorrect	gcCorrect
genome	genome
genome,GenoSet-method	genome
genome<-,GenoSet-method	genome
genomeAxis	genomeAxis
genoPlot	genoPlot-methods
genoPlot,numeric,numeric-method	genoPlot-methods
genoPlot,numeric,Rle-method	genoPlot-methods
genoPlot,RangedDataOrGenoSetOrGenomicRanges,ANY-method	genoPlot-methods
genoPlot-methods	genoPlot-methods
genoPos	genoPos-methods
genoPos,RangedDataOrGenoSetOrGenomicRanges-method	genoPos-methods
GenoSet	GenoSet
genoset	genoset-package
GenoSet-class	GenoSet-class
genoset-datasets	genoset-dataset
genoset-defunct	genoset-defunct
genoset-deprecated	genoset-deprecated
genoset.ds	genoset-dataset
initGenoSet	initGenoSet
isGenomeOrder	isGenomeOrder-methods
isGenomeOrder,GRanges-method	isGenomeOrder-methods
isGenomeOrder,RangedDataOrGenoSet-method	isGenomeOrder-methods
locData	locData-methods
locData,GenoSet-method	locData-methods
locData-methods	locData-methods
locData.gr	genoset-dataset
locData<-	locData-methods
locData<-,GenoSet,RangedDataOrGenomicRanges-method	locData-methods
locData<--methods	locData-methods
lr2cn	lr2cn
lrr	lrr
lrr,BAFSet-method	lrr
lrr<-	lrr
lrr<-,BAFSet,matrix-method	lrr
modeCenter	modeCenter
names	genoset-methods
names,GenoSet-method	genoset-methods
nrow	genoset-methods
nrow,GRanges-method	genoset-methods
pos	pos
pos,RangedDataOrGenoSetOrGenomicRanges-method	pos
rangeColMeans	rangeColMeans
rangeSampleMeans	rangeSampleMeans
rangeSegMeanLength	rangeSegMeanLength-methods
rangeSegMeanLength,GRanges,data.frame-method	rangeSegMeanLength-methods
rangeSegMeanLength,GRanges,list-method	rangeSegMeanLength-methods
readGenoSet	readGenoSet
rownames	rownames
rownames,GenoSet-method	rownames
rownames,GRanges-method	rownames
rownames<-	rownames
rownames<-,GRanges-method	rownames
runCBS	runCBS
sampleNames	colnames
sampleNames,GenoSet-method	colnames
sampleNames<-	colnames
segPairTable	segPairTable-methods
segPairTable,DataFrame,DataFrame-method	segPairTable-methods
segPairTable,Rle,Rle-method	segPairTable-methods
segs2Granges	segs2Granges
segs2RangedData	segs2RangedData
segs2Rle	segs2Rle
segs2RleDataFrame	segs2RleDataFrame
segTable	segTable-methods
segTable,DataFrame-method	segTable-methods
segTable,Rle-method	segTable-methods
show	show
show,BAFSet-method	show
show,CNSet-method	show
show,GenoSet-method	show
start	genoset-methods
start,GenoSet-method	genoset-methods
subsetAssayData	subsetAssayData
toGenomeOrder	toGenomeOrder-methods
toGenomeOrder,GenoSet-method	toGenomeOrder-methods
toGenomeOrder,GRanges-method	toGenomeOrder-methods
toGenomeOrder,RangedData-method	toGenomeOrder-methods
universe,GenoSet-method	genome
universe,GRanges-method	genome
universe<-,GenoSet-method	genome
universe<-,GRanges-method	genome
width	genoset-methods
[	genoset-methods
[,GenoSet,ANY,ANY,ANY-method	genoset-methods
[,GenoSet,ANY-method	genoset-methods
[,GenoSet,character,ANY,ANY-method	genoset-methods
[,GenoSet,character-method	genoset-methods
[,GenoSet,RangedDataOrGenomicRanges,ANY,ANY-method	genoset-methods
[,GenoSet,RangedDataOrGenomicRanges-method	genoset-methods
[<-	genoset-methods
[<-,GenoSet,ANY,ANY,ANY-method	genoset-methods
