# High-quality circular visualization of omic data

## Documentation for package ‘OmicCircos’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.

## Help Pages

circos | draw circular
OmicCircos | OmicCircos package
segAnglePo | generate circular skeleton data by user's mapping data
segAnglePo-method | ~~ Methods for Function 'segAnglePo' ~~
segAnglePo-methods | ~~ Methods for Function 'segAnglePo' ~~
sim.circos | circular data simulation
TCGA.BC.cnv.2k.60 | sub copy number data of TCGA Breast Cancer
TCGA.BC.fus | gene fusion (partly) of TCGA Breast Cancer
TCGA.BC.fus.lab | gene fusion (partly) of TCGA Breast Cancer
TCGA.BC.gene.exp.2k.60 | sub gene expression data of TCGA Breast Cancer
TCGA.BC.sample60 | sub types of TCGA Breast Cancer sub data set
TCGA.BC_Her2_cnv_exp | the pvalues of the association between the copy number and gene expression of sub TCGA Breast Cancer data set
TCGA.PAM50_genefu_hg18 | PAM50 gene list (hg18)
UCSC.chr.colors | chromosome banding colors from UCSC Genome Browser
UCSC.hg18 | human hg18 mapping reference by UCSC cytogenetics table
UCSC.hg18.chr | human hg18 cytogenetics table from UCSC Genome Browser
UCSC.hg19 | human hg19 mapping reference by UCSC cytogenetics table
UCSC.hg19.chr | human hg19 cytogenetics table from UCSC Genome Browser
UCSC.hg19.mac3 | seg.angle.po output of human hg19 and monkey rhemac3 by UCSC Genome Browser
UCSC.hg19.mac3.chr | human hg19 and monkey rhemac3 cytogenetics tables from UCSC Genome Browser
UCSC.hg19.mm10 | seg.angle.po output of human hg19 and mouse mm10 by UCSC Genome Browser
UCSC.hg19.mm10.chr | human hg19 and mouse mm10 cytogenetics tables from UCSC Genome Browser
UCSC.hs_cyto_mac | genome comparison of human hg19 and Macaca mulatta Mac3 by UCSC Genome Browser
UCSC.hs_cyto_mm | genome comparison of human hg19 and mouse mm10 by UCSC Genome Browser
UCSC.mm10 | mouse mm10 mapping reference by UCSC cytogenetics table
UCSC.mm10.chr | mouse mm10 cytogenetics table from UCSC Genome Browser
UCSC.mm9 | mouse mm9 mapping reference by UCSC cytogenetics table
UCSC.mm9.chr | mouse mm9 cytogenetics table from UCSC Genome Browser
UCSC_cytoband_hg19_Mac3 | combined cytogenetics data in human hg18 and Macaca mulatta Mac3
UCSC_cytoband_hg19_mm10 | combined cytogenetics data in human hg18 and mouse mm10