Package: ChAMP
Type: Package
Title: Chip Analysis Methylation Pipeline for Illumina
        HumanMethylation450
Version: 1.0.7
Date: 2014-02-06
Author: Tiffany Morris, Lee Butcher, Andy Feber, Andrew Teschendorff, Ankur Chakravarthy and Stephan Beck
Maintainer: Tiffany Morris <Tiffany.Morris@ucl.ac.uk>
Description: The package includes quality control metrics, a selection of normalization methods and novel methods to identify differentially methylated regions and to highlight copy number aberrations.  
License: GPL-3
Depends: R (>= 3.0.1), minfi, ChAMPdata, Illumina450ProbeVariants.db
Imports: sva, IlluminaHumanMethylation450kmanifest, limma, RPMM,
        DNAcopy, preprocessCore, impute, marray, wateRmelon
biocViews: Bioinformatics, DNAmethylation, DataImport, IlluminaChip,
        Preprocessing, QualityControl, Software,
        DifferentialMethylation, SNP, CopyNumberVariants
Packaged: 2014-02-07 06:31:37 UTC; biocbuild
Built: R 3.0.2; ; 2014-02-07 12:42:16 UTC; unix
