Package: CexoR
Version: 1.0.0
Date: 2013-09-09
Type: Package
Title: An R package to uncover high-resolution protein-DNA interactions
        in ChIP-exo replicates
Author: Pedro Madrigal <pm@engineering.com>
Description: Strand specific peak-pair calling in ChIP-exo replicates. The cumulative Skellam distribution function (package 'skellam') is used to detect significant normalized count differences of opposed sign at each DNA strand (peak-pairs). Irreproducible discovery rate for overlapping peak-pairs across biological replicates is estimated using the package 'idr'.
Depends: R (>= 2.10.0), IRanges
Maintainer: Pedro Madrigal <pm@engineering.com>
Imports: Rsamtools, GenomicRanges, rtracklayer, idr
Suggests: RUnit, BiocGenerics
License: Artistic-2.0 | GPL-2 + file LICENSE
biocViews: Transcription, Genetics
LazyLoad: yes
LazyData: yes
Packaged: 2013-10-15 05:18:22 UTC; biocbuild
Built: R 3.0.2; ; 2013-10-15 11:49:12 UTC; unix
