Package: BiSeq
Type: Package
Title: Processing and analyzing bisulfite sequencing data
Version: 1.2.5
Date: 2014-03-04
Author: Katja Hebestreit, Hans-Ulrich Klein 
Maintainer: Katja Hebestreit <katja.hebestreit@uni-muenster.de>
biocViews: Genetics, Sequencing, HighThroughputSequencing, Methylseq,
        DNAMethylation
Depends: R (>= 2.15.2), methods, IRanges (>= 1.17.24), GenomicRanges,
        Formula
Imports: methods, BiocGenerics, Biobase, IRanges, GenomicRanges,
        rtracklayer, parallel, betareg, lokern, Formula, globaltest
Description: The BiSeq package provides useful classes and functions to handle and analyze targeted bisulfite sequencing (BS) data such as reduced-representation bisulfite sequencing (RRBS) data. In particular, it implements an algorithm to detect differentially methylated regions (DMRs). The package takes already aligned BS data from one or multiple samples.
License: LGPL-3
Packaged: 2014-03-06 07:24:15 UTC; biocbuild
Built: R 3.0.2; ; 2014-03-06 14:28:37 UTC; unix
