Package: rTANDEM
Type: Package
Title: Encapsulate X!Tandem in R.
Version: 1.0.1
Date: 2013-07-26
SystemRequirements: rTANDEM uses expat and pthread libraries. See the
        README file for details.
Author@R: c(person("Frederic", "Fournier",
        email="frederic.fournier@crchuq.ulaval.ca"), person("Charles",
        "Joly Beauparlant", email="charles.joly-b@crchul.ulaval.ca"),
        person("Rene Paradis", email="rene.paradis@genome.ulaval.ca"),
        person("Arnaud", "Droit",
        email="arnaud.droit@crchuq.ulaval.ca"))
Author: Frederic Fournier <frederic.fournier@crchuq.ulaval.ca>, Charles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca>, Rene Paradis <rene.paradis@genome.ulaval.ca>, Arnaud Droit <arnaud.droit@crchuq.ulaval.ca>
Maintainer: Frederic Fournier <frederic.fournier@crchuq.ulaval.ca>
Description: This package encapsulate X!Tandem in R. In its most basic functionality, this package allows to call tandem(input) from R, just as tandem.exe /path/to/input.xml would be used to run X!Tandem from the command line. Classes are also provided for taxonomy and parameters objects and methods are provided to convert xml files to R objects and vice versa. This package is the first step in an attempt to provide a reliable worflow for proteomics analysis in R.
biocViews: MassSpectrometry, Proteomics
License: Artistic-1.0 | file LICENSE
Imports: methods
Depends: XML, Rcpp, data.table (>= 1.8.8)
Suggests: biomaRt
LinkingTo: Rcpp
Packaged: 2013-07-27 07:25:33 UTC; biocbuild
Built: R 3.0.1; i386-w64-mingw32; 2013-07-27 12:13:30 UTC; windows
Archs: i386, x64
