Package: oligo
Version: 1.24.2
Title: Preprocessing tools for oligonucleotide arrays.
Author: Benilton Carvalho and Rafael Irizarry. Contributors: Ben Bolstad, Vincent Carey, Wolfgang Huber, Harris Jaffee, Jim MacDonald, Matt Settles
Maintainer: Benilton Carvalho <beniltoncarvalho@gmail.com>
Depends: R (>= 2.15.0), BiocGenerics (>= 0.3.2), oligoClasses (>=
        1.19.43), Biobase (>= 2.17.8)
Imports: affyio (>= 1.25.0), affxparser (>= 1.29.11), Biostrings (>=
        2.25.12), BiocGenerics (>= 0.3.2), DBI (>= 0.2-5), ff,
        graphics, methods, preprocessCore (>= 1.19.0), splines, stats,
        stats4, utils, zlibbioc
Enhances: ff, doMC, doMPI
LinkingTo: preprocessCore
Suggests: hapmap100kxba, pd.mapping50k.xba240, pd.huex.1.0.st.v2,
        pd.hg18.60mer.expr, pd.hugene.1.0.st.v1, maqcExpression4plex,
        genefilter, limma, RColorBrewer, oligoData, RUnit
Description: A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level. It currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files).
License: LGPL (>= 2)
Collate: AllGenerics.R methods-GeneFeatureSet.R
        methods-ExonFeatureSet.R methods-ExpressionFeatureSet.R
        methods-ExpressionSet.R methods-LDS.R methods-FeatureSet.R
        methods-SnpFeatureSet.R methods-SnpCnvFeatureSet.R
        methods-TilingFeatureSet.R methods-DBPDInfo.R
        methods-background.R methods-normalization.R
        methods-summarization.R read.celfiles.R read.xysfiles.R
        utils-general.R utils-selectors.R todo-snp.R functions-crlmm.R
        functions-snprma.R justSNPRMA.R justCRLMM.R methods-snp6.R
        methods-genotype.R methods-PLMset.R zzz.R
LazyLoad: Yes
biocViews: Microarray, OneChannel, TwoChannel, Preprocessing, SNP,
        DifferentialExpression, ExonArray, GeneExpression,
        Bioinformatics, DataImport
Packaged: 2013-07-31 06:24:51 UTC; biocbuild
Built: R 3.0.1; i386-w64-mingw32; 2013-07-31 12:26:12 UTC; windows
Archs: i386, x64
