# A package for discriminative motif discovery, designed for high throughput sequencing dataset

## Documentation for package ‘motifRG’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

class:Motif | Motif objects
control.seq | control sequence for CTCF peaks
ctcf.motifs | CTCF motifs predicted by motifRG
ctcf.seq | sequence for CTCF peaks
findMotif | De-novo discovery of distriminative motifs
Motif-class | Motif objects
motifHtmlTable | create of table of motifs
motifLatexTable | create of table of motifs
plotMotif | plot motif sequence matches
refinePWMMotif | create a PWM (Position Weight Model) model given a initial set of motif matches and input sequences
refinePWMMotifExtend | create an extended PWM (Position Weight Model) model given a initial set of motif matches and input sequences
summaryMotif | summarize a list of motifs