# statistical analysis and visulization of functional profiles for genes and gene clusters

## Documentation for package ‘clusterProfiler’ version 1.8.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

clusterProfiler-package | statistical analysis and visulization of functional profiles for genes and gene clusters The package implements methods to analyze and visualize functional profiles of gene and gene clusters.
buildGOmap | buildGOmap
clusterProfiler | statistical analysis and visulization of functional profiles for genes and gene clusters The package implements methods to analyze and visualize functional profiles of gene and gene clusters.
compareCluster | Compare gene clusters functional profile Given a list of gene set, this function will compute profiles of each gene cluster.
compareClusterResult-class | Class "compareClusterResult" This class represents the comparison result of gene clusters by GO categories at specific level or GO enrichment analysis.
DataSet | Datasets gcSample contains a sample of gene clusters.
enrichGO | GO Enrichment Analysis of a gene set. Given a vector of genes, this function will return the enrichment GO categories with FDR control.
enrichKEGG | KEGG Enrichment Analysis of a gene set. Given a vector of genes, this function will return the enrichment KEGG categories with FDR control.
gcSample | Datasets gcSample contains a sample of gene clusters.
getGOLevel | get GOIDs at a specific level
Gff2GeneTable | Gff2GeneTable
groupGO | Functional Profile of a gene set at specific GO level. Given a vector of genes, this function will return the GO profile at specific level.
groupGOResult-class | Class "groupGOResult" This class represents the result of functional Profiles of a set of gene at specific GO level.
plot | plot method
plot-method | Class "compareClusterResult" This class represents the comparison result of gene clusters by GO categories at specific level or GO enrichment analysis.
plot-method | plot method
plotting.clusterProfile | plotting-clusterProfile
show | show method
show-method | Class "compareClusterResult" This class represents the comparison result of gene clusters by GO categories at specific level or GO enrichment analysis.
show-method | Class "groupGOResult" This class represents the result of functional Profiles of a set of gene at specific GO level.
summary | summary method
summary-method | Class "compareClusterResult" This class represents the comparison result of gene clusters by GO categories at specific level or GO enrichment analysis.