Package: QuasR
Type: Package
Title: Quantify and Annotate Short Reads in R
Version: 1.0.9
Date: 2013-09-27
Author: Anita Lerch, Dimos Gaiditzis and Michael Stadler
Maintainer: Michael Stadler <michael.stadler@fmi.ch>
Depends: R (>= 2.15.0), parallel, GenomicRanges, Rbowtie (>= 0.99.0)
Imports: methods, zlibbioc, BiocGenerics, IRanges, BiocInstaller,
        Biobase, Biostrings, GenomicRanges, BSgenome, Rsamtools,
        GenomicFeatures, ShortRead
Suggests: Rsamtools, rtracklayer, Gviz, RUnit
LinkingTo: Rsamtools
Description: This package provides a framework for the quantification and analysis of Short Reads. It covers a complete workflow starting from raw sequence reads, over creation of alignments and quality control plots, to the quantification of genomic regions of interest.
License: GPL-2
biocViews: Genetics, Preprocessing, HighThroughputSequencing, ChIPseq,
        RNAseq, Methylseq
Packaged: 2013-09-28 07:38:49 UTC; biocbuild
Built: R 3.0.1; i386-w64-mingw32; 2013-09-28 12:18:24 UTC; windows
Archs: i386, x64
