Package: MineICA
Type: Package
Title: Analysis of an ICA decomposition obtained on genomics data
Version: 1.0.0
Date: 2012-03-16
Author: Anne Biton
Maintainer: Anne Biton <anne.biton@gmail.com>
Description: The goal of MineICA is to make easier the interpretation of the
    interpretation of a decomposition obtained by Independent Component
    Analysis on transcriptomic data. It helps the biological interpretation of
    the components by studying their association with variables (e.g sample
    annotations) and gene sets, and enables the comparison of components from
    different datasets using correlation-based graph.
License: GPL-2
LazyLoad: yes
BiocViews: Bioinformatics, Visualizations, MultipleComparisons
Imports: AnnotationDbi, lumi, fpc, lumiHumanAll.db
Depends: R (>= 2.10), Biobase, plyr, ggplot2, scales, foreach, xtable,
        biomaRt, gtools, GOstats, cluster, marray, mclust,
        RColorBrewer, colorspace, igraph, Rgraphviz, graph, annotate,
        Hmisc, fastICA, JADE, methods
Suggests: biomaRt, GOstats, cluster, hgu133a.db, mclust, igraph,
        breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP,
        breastCancerVDX
Enhances: doMC
Collate: 'AllClasses.R' 'AllGeneric.R' 'methods-IcaSet.R'
        'methods-MineICAParams.R' 'compareAnalysis.R'
        'functions_comp2annot.R' 'functions_comp2annottests.R'
        'functions_enrich.R' 'functions.R' 'heatmap.plus.R'
        'heatmapsOnSel.R' 'runAn.R' 'compareGenes.R'
Packaged: 2013-04-04 11:23:14 UTC; biocbuild
Built: R 3.0.0; ; 2013-04-04 17:02:12 UTC; windows
