Package: GeneNetworkBuilder
Type: Package
Version: 1.2.0
Date: 2012-12-11
Title: Build Regulatory Network from ChIP-chip/ChIP-seq and Expression
        Data
Authors@R: c(person("Jianhong Ou", "Developer", role = c("aut", "cre"),
        email = "jianhong.ou@umassmed.edu"), person("Lihua Julie Zhu",
        "Developer", role = "aut", email = "Julie.Zhu@umassmed.edu"))
Author: Jianhong Ou and Lihua Julie Zhu
Maintainer: Jianhong Ou <jianhong.ou@umassmed.edu>
Imports: plyr, graph
Depends: R (>= 2.15.1), Rcpp (>= 0.9.13), graph
Suggests: RUnit, BiocGenerics, Rgraphviz, XML, RCytoscape
LinkingTo: Rcpp
biocViews: HighThroughputSequencing, Microarray, GraphsAndNetworks
Description: Appliation for discovering direct or indirect targets of transcription factors 
		using ChIP-chip or ChIP-seq, and microarray or RNA-seq gene expression data. 
		Inputting a list of genes of potential targets of one TF from ChIP-chip or ChIP-seq, 
		and the gene expression results, GeneNetworkBuilder generates a regulatory
		network of the TF.
License: GPL (>= 2)
Lazyload: yes
Packaged: 2013-04-04 11:14:53 UTC; biocbuild
Built: R 3.0.0; i386-w64-mingw32; 2013-04-04 16:53:16 UTC; windows
Archs: i386, x64
