All.cis                 function that computes score tests for all SNP
                        cis to genes, with flexible filtering
GGtools-package         software and data for analyses in genetics of
                        gene expression
best.cis.eQTLs          collect genewise best scoring eQTL
best.trans.eQTLs        collect strongest trans SNP-gene associations
                        in a buffer of size K genes per SNP
bindmaf                 bind testing metadata to a best.cis.eQTLs
                        result
eqtlTests               compute association statistics between all
                        probes and SNP in an smlSet instance
eqtlTestsManager-class
                        Class '"eqtlTestsManager"'
ex                      ExpressionSet instance for illustrating
                        integrative smlSet container
getCisMap               create, using Bioconductor annotation
                        resources, a structure that enumerates SNP in
                        the vicinity of ('cis' to) genes
gwSnpTests              execute a series of tests for association
                        between genotype and expression
richNull                bind metadata concerning SNP allele frequency
                        and other aspects of optimized cis-eQTL
                        association to an mcwBestCis instance
sensanal                Summarize information from a collection of eQTL
                        searches for sensitivity assessment
sensiCisInput-class     Class '"sensiCisInput"'
sensiCisOutput-class    Class '"sensiCisOutput"'
snplocsDefault          name the default SNPlocs.Hsapiens.dbSNP.*
                        package
strMultPop              serialization of a table from Stranger's
                        multipopulation eQTL report
transManager-class      Class '"transManager"'
transScores             obtain the top trans associations for each SNP
                        in an smlSet
transTab                tabulate results of transScores run
vcf2sm                  generate a SnpMatrix instance on the basis of a
                        VCF (4.0) file
