bayespeak               BayesPeak - Bayesian analysis of ChIP-seq data
plot.PP                 Job PP plot.
plot.bed                Plot bed file.
plot.job                Plot the called peaks in a job.
plot.overfitdiag        Overfitting diagnostic functions
raw.output              Example raw.output object
raw.output.H3K4me3      Example raw.output object from H3K4me3 data
read.bed                BayesPeak - Bayesian analysis of ChIP-seq data
summarize.peaks         Summarize Peaks
