Package: deepSNV
Imports: Rsamtools
Maintainer: Moritz Gerstung <moritz.gerstung@sanger.ac.uk>
License: GPL-3
Title: Detection of subclonal SNVs in deep sequencing experiments.
biocViews: GeneticVariability, SNP, Sequencing, Genetics, DataImport
LinkingTo: Rsamtools
Type: Package
LazyLoad: yes
Author: Moritz Gerstung and Niko Beerenwinkel
Description: This package provides provides a quantitative variant caller
    for detecting subclonal mutations in ultra-deep (>=100x coverage)
    sequencing experiments. It assumes a comparative setup with a control
    experiment of the same loci and a beta-binomial model to discriminate
    sequencing errors and subclonal SNVs.
Version: 1.6.0
URL: http://www.cbg.ethz.ch/software/deepSNV
Depends: R (>= 2.13.0), Rsamtools (>= 1.4.3), GenomicRanges, IRanges,
        Biostrings, VGAM, methods, graphics
Collate: 'deepSNV-class.R' 'deepSNV-experimental.R'
        'deepSNV-functions.R' 'deepSNV-generics.R' 'deepSNV-methods.R'
        'deepSNV-misc.R' 'deepSNV-package.R'
Packaged: 2013-04-11 04:00:21 UTC; biocbuild
Built: R 3.0.0; x86_64-apple-darwin10.8.0; 2013-04-11 07:53:49 UTC; unix
