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@Article{Castro2012,
  author = {Mauro AA Castro and Xin Wang and Michael NC Fletcher and Kerstin B Meyer and Florian Markowetz},
  title = {RedeR: R/Bioconductor package for representing modular structures, nested networks and multiple levels of hierarchical associations.},
  journal = {Genome Biology},
  year = {2012},
  volume = {13},
  pages = {R29},
  number = {4},
  }

@Misc{RedeR,
    title = {RedeR: bridging the gap between network analysis and visualization. },
    author = {Mauro Antonio Alves Castro and Xin Wang and Florian Markowetz.},
    organization = {Cancer Research UK - Cambridge Research Institute, Cambridge University. },
    address = {Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK. },
    year = {2011},
    type = {R package},
    url = {http://www.markowetzlab.org/software/networks.html},
  }

@Manual{XMLRPC,
    title = {XMLRPC: Remote Procedure Call (RPC) via XML in R},
    author = {Duncan Temple Lang},
    year = {2010},
    note = {R package},
    url = {http://www.omegahat.org/XMLRPC}
  }

@Manual{rJava,
    title = { rJava: Low-level R to Java interface},
    author = {Simon Urbanek},
    year = {2010},
    note = {R package},
    url = {http://CRAN.R-project.org/package=rJava}
  }
  
@Article{igraph,
    title = {The igraph software package for complex network research},
    author = {Gabor Csardi and Tamas Nepusz},
    journal = {InterJournal},
    volume = {Complex Systems},
    pages = {1695},
    year = {2006},
    url = {http://igraph.sf.net},
  }

@Manual{JavaGD,
    title = {JavaGD: Java Graphics Device},
    author = {Simon Urbanek},
    year = {2010},
    note = {R package},
    url = {http://CRAN.R-project.org/package=JavaGD},
  }
  

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