Package: R453Plus1Toolbox
Type: Package
Title: A package for importing and analyzing data from Roche's Genome
        Sequencer System.
Version: 1.10.0
Date: 2013-03-11
Author: Hans-Ulrich Klein, Christoph Bartenhagen, Christian Ruckert
Maintainer: Hans-Ulrich Klein <h.klein@uni-muenster.de>
Imports: BiocGenerics (>= 0.1.3), Biobase (>= 2.15.1), biomaRt,
        Biostrings, BSgenome, IRanges (>= 1.17.24), methods, R2HTML,
        Rsamtools, rtracklayer, ShortRead, VariantAnnotation, xtable,
        tools
Depends: R (>= 2.12.0), BiocGenerics, Biobase, Biostrings,
        BSgenome.Scerevisiae.UCSC.sacCer2,TeachingDemos
Suggests: rtracklayer, ShortRead, Rsamtools,
        BSgenome.Hsapiens.UCSC.hg19
Description: The R453Plus1 Toolbox comprises useful functions for the analysis of data generated by Roche's 454 sequencing platform. It adds functions for quality assurance as well as for annotation and visualization of detected variants, complementing the software tools shipped by Roche with their product. Further, a pipeline for the detection of structural variants is provided.
License: LGPL-3
biocViews: HighThroughputSequencing, Infrastructure, DataImport,
        DataRepresentation, Visualization, QualityControl,
        ReportWriting
Packaged: 2013-04-11 03:44:28 UTC; biocbuild
Built: R 3.0.0; x86_64-apple-darwin10.8.0; 2013-04-11 08:04:47 UTC; unix
