HTSanalyzeR-package	HTSanalyzeR
aggregatePvals	aggregatePvals
analyze	analyze
analyze,GSCA-method	analyze
analyze,NWA-method	analyze
analyzeGeneSetCollections	analyzeGeneSetCollections
annotationConvertor	annotationConvertor
appendGSTerms	appendGSTerms
appendGSTerms,GSCA-method	appendGSTerms
biogridDataDownload	biogridDataDownload
Biogrid_DM_Interactome	data-KcViab
Biogrid_DM_Mat	data-KcViab
celAnnotationConvertor	celAnnotationConvertor
cellHTS2OutputStatTests	cellHTS2OutputStatTests
changes	changes
collectionGsea	collectionGsea
drosoAnnotationConvertor	drosoAnnotationConvertor
duplicateRemover	duplicateRemover
FDRcollectionGsea	FDRcollectionGsea
GenHTSAHtmlRowUnit	GenHTSAHtmlRowUnit
getTopGeneSets	getTopGeneSets
getTopGeneSets,GSCA-method	getTopGeneSets
GOGeneSets	GOGeneSets
GSCA	GSCA-class
GSCA-class	GSCA-class
gseaPlots	gseaPlots
gseaScores	gseaScores
gseaScoresBatch	gseaScores
gseaScoresBatchParallel	gseaScores
htmlAttrVectorPaste	htmlAttrVectorPaste
HTSanalyzeR	HTSanalyzeR
HTSanalyzeR4cellHTS2	HTSanalyzeR4cellHTS2
hyperGeoTest	hyperGeoTest
interactome	interactome
interactome,NWA-method	interactome
KcViab_Data4Enrich	data-KcViab
KcViab_GSCA	data-KcViab
KcViab_Norm	data-KcViab
KcViab_NWA	data-KcViab
KcViab_PVals	data-KcViab
KeggGeneSets	KeggGeneSets
makeGSEAplots	makeGSEAplots
makeOverlapTable	makeOverlapTable
mammalAnnotationConvertor	mammalAnnotationConvertor
multiHyperGeoTest	multiHyperGeoTest
networkAnalysis	networkAnalysis
networkPlot	networkPlot
NWA	NWA-class
NWA-class	NWA-class
pairwiseGsea	pairwiseGsea
pairwiseGseaPlot	pairwiseGseaPlot
pairwisePhenoMannWhit	pairwisePhenoMannWhit
paraCheck	paraCheck
permutationPvalueCollectionGsea	permutationPvalueCollectionGsea
plotEnrichMap	plotEnrichMap
plotEnrichMap,GSCA-method	plotEnrichMap
plotGSEA	plotGSEA
plotGSEA,GSCA-method	plotGSEA
plotSubNet	plotSubNet
plotSubNet,NWA-method	plotSubNet
preprocess	preprocess
preprocess,GSCA-method	preprocess
preprocess,NWA-method	preprocess
report	report
report,GSCA-method	report
report,NWA-method	report
reportAll	reportAll
reportAll,GSCA_Or_NULL,NWA_Or_NULL-method	reportAll
show	summarize
show,GSCA-method	summarize
show,NWA-method	summarize
summarize	summarize
summarize,GSCA-method	summarize
summarize,NWA-method	summarize
viewEnrichMap	viewEnrichMap
viewEnrichMap,GSCA-method	viewEnrichMap
viewGSEA	viewGSEA
viewGSEA,GSCA-method	viewGSEA
viewSubNet	viewSubNet
viewSubNet,NWA-method	viewSubNet
writeHits	GSCA-class
writeHits,GSCA-method	GSCA-class
writeHTSAHtmlHead	writeHTSAHtmlHead
writeHTSAHtmlSummary	writeHTSAHtmlSummary
writeHTSAHtmlTab	writeHTSAHtmlTab
writeHTSAHtmlTable	writeHTSAHtmlTable
writeHTSAHtmlTail	writeHTSAHtmlTail
writeReportHTSA	writeReportHTSA
