Package: HMMcopy
Type: Package
Title: Copy number prediction with correction for GC and mappability
        bias for HTS data
Version: 1.2.0
Date: 2012-08-27
Author: Daniel Lai, Gavin Ha, Sohrab Shah
Maintainer: Daniel Lai <jujubix@cs.ubc.ca>, Gavin Ha <gha@bccrc.ca>,
        Sohrab Shah <sshah@bccrc.ca>
Import: IRanges
Depends: R (>= 2.10.0), IRanges (>= 1.4.16), geneplotter (>= 1.24.0)
Description: Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis.  Designed for rapid correction of high coverage whole genome tumour and normal samples.
License: GPL-3
biocViews: Sequencing, Preprocessing, Visualization,
        CopyNumberVariants, HighThroughputSequencing, Microarray
Packaged: 2013-04-11 04:12:59 UTC; biocbuild
Built: R 3.0.0; x86_64-apple-darwin10.8.0; 2013-04-11 07:58:37 UTC; unix
