Package: HCsnip
Type: Package
Title: Semi-supervised adaptive-height snipping of the Hierarchical
        Clustering tree
Version: 1.0.0
Author: Askar Obulkasim
Maintainer: Askar Obulkasim <askar.wubulikasimu@vumc.nl>
Description: Decompose given hierarchical clustering tree into non-overlapping clusters in a semi-supervised way by using available patients follow-up information as guidance. Contains functions for snipping HC tree, various cluster quality evaluation criteria, assigning new patients to one of the two given HC trees, testing the significance of clusters with permutation argument and clusters visualization using sample's molecular entropy.
License: GPL (>= 2)
LazyLoad: yes
Depends: R(>= 2.10.0), survival, coin, fpc, clusterRepro, impute,
        randomForestSRC, sm, sigaR, Biobase
biocViews: Microarray, Bioinformatics, aCGH, GeneExpression, Clustering
Packaged: 2013-04-11 04:18:41 UTC; biocbuild
Built: R 3.0.0; ; 2013-04-11 07:58:17 UTC; unix
