# Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer

## Documentation for package ‘DriverNet’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

DriverNet-package | Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer
actualEvents | Actual events covered by driver mutations
actualEvents-method | Class '"DriverNetResult"'
computeDrivers | Compute a list of driver mutations
computeRandomizedResult | Randomly compute lists of driver mutations
DriverNet | Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer
DriverNetResult-class | Class '"DriverNetResult"'
drivers | List of driver mutations identified by DriverNet
drivers-method | Class '"DriverNetResult"'
getPatientOutlierMatrix | Compute the patient outlier matrix
preprocessMatrices | Remove unnecessary entries from matrices
resultSummary | Summarize result for drivers ranking.
sampleDriversList | Sample DriverNet result
sampleGeneNames | Sample gene names
sampleInfluenceGraph | Sample influence graph
samplePatientExpressionMatrix | Sample patient expression matrix
samplePatientMutationMatrix | Sample patient mutation matrix
samplePatientOutlierMatrix | Sample patient outlier matrix
sampleRandomDriversResult | Sample Result from computeRandomizedResult
totalEvents | Total number of events in the data
totalEvents-method | Class '"DriverNetResult"'