Package: phyloseq
Version: 1.2.1
Date: 2013-01-23
Title: Handling and analysis of high-throughput phylogenetic sequence
        data.
Description: phyloseq provides a set of classes and tools
    to facilitate the import, storage, analysis, and
    graphical display of phylogenetic sequencing data.
Maintainer: Paul J. McMurdie <mcmurdie@stanford.edu>
Author: Paul J. McMurdie <mcmurdie@stanford.edu>, Susan
    Holmes <susan@stat.stanford.edu>
License: AGPL-3
Imports: ape (>= 3.0), foreach (>= 1.3), igraph0 (>= 0.5), multtest (>=
        2.8), plyr (>= 1.7.1), reshape (>= 0.8.4), RJSONIO (>= 0.98),
        scales (>= 0.2.2), vegan (>= 2.0)
Depends: R (>= 2.15.0), methods, ade4 (>= 1.4), ggplot2 (>= 0.9.2),
        picante (>= 1.3)
Suggests: genefilter, testthat
Enhances: doParallel (>= 1.0)
biocViews: Clustering, Classification, MultipleComparisons,
        QualityControl, GeneticVariability, HighThroughputSequencing
URL: http://joey711.github.com/phyloseq/
BugReports: https://github.com/joey711/phyloseq/issues
Collate: 'allClasses.R' 'allPackage.R' 'allData.R' 'as-methods.R'
        'show-methods.R' 'plot-methods.R' 'extract-methods.R'
        'almostAllAccessors.R' 'otuTable-class.R' 'phyloseq-class.R'
        'taxonomyTable-class.R' 'IO-methods.R' 'merge-methods.R'
        'multtest-wrapper.R' 'ordination-methods.R'
        'transform_filter-methods.R' 'validity-methods.R'
        'assignment-methods.R' 'sampleData-class.R' 'extend_vegan.R'
        'network-methods.R' 'distance-methods.R'
        'deprecated_functions.R'
Packaged: 2013-01-24 05:55:52 UTC; biocbuild
Built: R 2.15.2; ; 2013-01-24 10:00:35 UTC; unix
