# Exploratory analysis and differential expression for RNA-seq data

## Documentation for package ‘NOISeq’ version 1.1.5

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

addData | Create an object of eSet class
Biodetection | Biodetection class
Biodetection-class | Biodetection class
CD | CD class
CD-class | CD class
CountsBio | CountsBio class
CountsBio-class | CountsBio class
dat | Exploration of expression data.
dat2save | -
dat2save-method | Biodetection class
dat2save-method | CD class
dat2save-method | CountsBio class
dat2save-method | DLBio class
dat2save-method | Saturation class
DE.plot | Plot to compare expression values for two conditions or to represent differential expression statistics
degenes | Recover the differencially expressed features
DLBio | DLBio class
DLBio-class | DLBio class
explo.plot | Exploratory plots for sequencing data.
explo.plot-method | Biodetection class
explo.plot-method | CD class
explo.plot-method | CountsBio class
explo.plot-method | DLBio class
explo.plot-method | Saturation class
mybiotypes | Marioni's dataset
mychroms | Marioni's dataset
myCounts | Class myCounts
mycounts | Marioni's dataset
myCounts-class | Class myCounts
mydata | Example of objects used and created by the NOISeq package
myfactors | Marioni's dataset
mylength | Marioni's dataset
mynoiseq | Example of objects used and created by the NOISeq package
noiseq | Differential expression method
Output | Output class of NOISeq
Output-class | Output class of NOISeq
readData | Create an object of eSet class
rpkm | Normalization methods
Saturation | Saturation class
Saturation-class | Saturation class
show-method | Biodetection class
show-method | CD class
show-method | CountsBio class
show-method | DLBio class
show-method | Output class of NOISeq
show-method | Saturation class
tmm | Normalization methods
uqua | Normalization methods