# Database Enabled Code for Ideal Probe Hybridization Employing R

## Documentation for package ‘DECIPHER’ version 1.4.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

DECIPHER-package | Database Enabled Code for Ideal Probe Hybridization Employing R
Add2DB | Add Data To A Database
BrowseDB | View A Database Table In A Web Browser
BrowseSequences | View Sequences In A Web Browser
CalculateEfficiencyArray | Predicts the Hybridization Efficiency of Probe/Target Sequence Pairs
CalculateEfficiencyPCR | Predicts Amplification Efficiency of Primer Sequences
ConsensusSequence | Create A Consensus Sequence
CreateChimeras | Creates Artificial Chimeras
DB2FASTA | Export Database Sequences to FASTA File
DECIPHER | Database Enabled Code for Ideal Probe Hybridization Employing R
deltaGrules | Free Energy of Hybridization of Probe/Target Quadruplets
DesignPrimers | Designs Primers Targeting a Specific Group of Sequences
DistanceMatrix | Calculate the Distance Between DNA Sequences
FindChimeras | Find Chimeras In A Sequence Database
FormGroups | Forms Groups By Rank
IdClusters | Cluster Sequences By Distance
IdConsensus | Create Consensus Sequences by Groups
IdentifyByRank | Identify By Taxonomic Rank
IdLengths | Determine the Number of Bases, Nonbases, and Width of Each Sequence
SearchDB | Obtain Specific Sequences from A Database
Seqs2DB | Add Sequences from Text File to Database
TerminalChar | Determine the Number of Terminal Characters
TileSeqs | Form a Set of Tiles for Each Group of Sequences.