export("samData<-")
export("sampleData<-")
export("taxTab<-")
export(DPCoA)
export(TransformSampleCounts)
export(access)
export(distance)
export(estimate_richness)
export(export_env_file)
export(filter_taxa)
export(filterfunSample)
export(getTaxa)
export(getVariable)
export(getslots.phyloseq)
export(import)
export(import_RDP_cluster)
export(import_biom)
export(import_env_file)
export(import_mothur)
export(import_mothur_dist)
export(import_pyrotagger_tab)
export(import_qiime)
export(make_sample_network)
export(merge_phyloseq)
export(ordinate)
export(phyloseq)
export(plot_ordination)
export(plot_richness_estimates)
export(plot_sample_network)
export(plot_taxa_bar)
export(plot_tree_phyloseq)
export(rank.names)
export(rm_outlierf)
export(samData)
export(sample.variables)
export(sampleMap)
export(sampleNames)
export(sampleSums)
export(show_mothur_list_cutoffs)
export(speciesSums)
export(speciesarerows)
export(subset_ord_plot)
export(subset_samples)
export(subset_species)
export(taxaplot)
export(taxtab)
export(threshrank)
export(threshrankfun)
export(tipsymbols)
export(tiptext)
export(topf)
export(topk)
export(topp)
export(transformSampleCounts)
export(transformsamplecounts)
exportClasses(otuTable)
exportClasses(phylo)
exportClasses(phyloseq)
exportClasses(sampleData)
exportClasses(taxonomyTable)
exportMethods("[")
exportMethods("otuTable<-")
exportMethods("speciesarerows<-")
exportMethods("tre<-")
exportMethods(UniFrac)
exportMethods(genefilterSample)
exportMethods(getSamples)
exportMethods(getSpecies)
exportMethods(merge_phyloseq_pair)
exportMethods(merge_samples)
exportMethods(merge_species)
exportMethods(mt)
exportMethods(nsamples)
exportMethods(nspecies)
exportMethods(otuTable)
exportMethods(plot_phyloseq)
exportMethods(prune_samples)
exportMethods(prune_species)
exportMethods(sample.names)
exportMethods(sampleData)
exportMethods(show)
exportMethods(species.names)
exportMethods(speciesAreRows)
exportMethods(t)
exportMethods(taxTab)
exportMethods(taxglom)
exportMethods(tipglom)
exportMethods(tre)
import(foreach)
import(vegan)
importFrom(RJSONIO,fromJSON)
importFrom(igraph0,V)
importFrom(igraph0,degree)
importFrom(igraph0,delete.vertices)
importFrom(igraph0,get.edgelist)
importFrom(igraph0,graph.adjacency)
importFrom(igraph0,layout.fruchterman.reingold)
importFrom(multtest,mt.maxT)
importFrom(multtest,mt.minP)
importFrom(plyr,is.discrete)
importFrom(plyr,laply)
importFrom(plyr,ldply)
importFrom(reshape,melt)
