Package: oligo
Version: 1.20.4
Title: Preprocessing tools for oligonucleotide arrays.
Author: Benilton Carvalho and Rafael Irizarry. Contributors: Ben Bolstad, Vincent Carey, Wolfgang Huber, Harris Jaffee, Jim MacDonald, Matt Settles
Maintainer: Benilton Carvalho <Benilton.Carvalho@cancer.org.uk>
Depends: R (>= 2.14.0), oligoClasses (>= 1.17.35)
Imports: affyio (>= 1.23.2), affxparser (>= 1.27.5), Biobase (>=
        2.15.4), Biostrings (>= 2.23.6), BiocGenerics (>= 0.1.14), DBI
        (>= 0.2-5), ff, graphics, methods, preprocessCore (>= 1.17.7),
        splines, stats, stats4, utils, zlibbioc
Enhances: ff, doMC, doMPI
LinkingTo: preprocessCore
Suggests: hapmap100kxba, pd.mapping50k.xba240, pd.huex.1.0.st.v2,
        pd.hg18.60mer.expr, pd.hugene.1.0.st.v1, maqcExpression4plex,
        genefilter, limma, RColorBrewer, oligoData, RUnit
Description: A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level. It currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files).
License: LGPL (>= 2)
Collate: AllGenerics.R methods-GeneFeatureSet.R
        methods-ExonFeatureSet.R methods-ExpressionFeatureSet.R
        methods-ExpressionSet.R methods-LDS.R methods-FeatureSet.R
        methods-SnpFeatureSet.R methods-SnpCnvFeatureSet.R
        methods-TilingFeatureSet.R methods-DBPDInfo.R
        methods-background.R methods-normalization.R
        methods-summarization.R read.celfiles.R read.xysfiles.R
        utils-general.R utils-selectors.R todo-snp.R functions-crlmm.R
        functions-snprma.R justSNPRMA.R justCRLMM.R methods-snp6.R
        methods-genotype.R methods-PLMset.R zzz.R
LazyLoad: Yes
biocViews: Microarray, OneChannel, TwoChannel, Preprocessing, SNP,
        DifferentialExpression, ExonArray, GeneExpression,
        Bioinformatics, DataImport
Packaged: 2012-07-05 05:03:34 UTC; biocbuild
Built: R 2.15.1; i386-pc-mingw32; 2012-07-05 09:39:57 UTC; windows
Archs: i386, x64
