# representing and modeling data in the NHGRI GWAS catalog

## Documentation for package ‘gwascat’ version 1.0.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.

## Help Pages

gwascat-package | representing and modeling data in the NHGRI GWAS catalog
chklocs | operations on GWAS catalog
g17SM | representing and modeling data in the NHGRI GWAS catalog
getRsids | Class '"gwaswloc"'
getRsids-method | Class '"gwaswloc"'
getTraits | Class '"gwaswloc"'
getTraits-method | Class '"gwaswloc"'
gg17N | representing and modeling data in the NHGRI GWAS catalog
gw6.rs_17 | representing and modeling data in the NHGRI GWAS catalog
gwascat | representing and modeling data in the NHGRI GWAS catalog
gwaswloc-class | Class '"gwaswloc"'
gwdf_2012_02_02 | internal data frame for NHGRI GWAS catalog
gwdf_2012_03_07 | internal data frame for NHGRI GWAS catalog
gwdf_2012_03_20 | internal data frame for NHGRI GWAS catalog
locon6 | location information for 10000 SNPs probed on Affy GW 6.0
locs4trait | operations on GWAS catalog
low17 | representing and modeling data in the NHGRI GWAS catalog
obo2graphNEL | convert a typical OBO text file to a graphNEL instance (using Term elements)
riskyAlleleCount | given a matrix of subjects x SNP calls, count number of risky alleles
rules_6.0_1kg_17 | representing and modeling data in the NHGRI GWAS catalog
subsetByChromosome | Class '"gwaswloc"'
subsetByChromosome-method | Class '"gwaswloc"'
subsetByTraits | Class '"gwaswloc"'
subsetByTraits-method | Class '"gwaswloc"'
topTraits | operations on GWAS catalog
[-method | Class '"gwaswloc"'