RNAseq-class            Class "RNAseq"
RPKM                    easyRNASeq count table correction to RPKM
accessors               Accessors for RNAseq class
barcodePlot             Methods extending the ShortRead package
                        functionalities
coerce,Genome_intervals,RangedData-method
                        Extension for the genomeIntervals package
colnames                Extension of the GenomicRanges package
easyRNASeq              easyRNASeq method
easyRNASeq-package      Count summarization and normalization pipeline
                        for Next Generation Sequencing data.
exonCounts              Count methods for RNAseq object
fetchAnnotation         Fetch genic annotation from a gff/gtf file or
                        using biomaRt
fetchCoverage           Compute the coverage from a Short Read
                        Alignment file
findIslands             Identify expressed regions de-novo
multivariateConditions
                        Extension for the DESeq package
plotDispersionEstimates
                        DESeq and edgeR common methods
plotNormalizationFactors
                        Extension for the edgeR package
print                   Method to print a RNAseq object
ranges                  Extension of the IRanges package
show-methods            Display the content of a RNAseq object
