Package: easyRNASeq
Version: 1.2.5
Date: 2011-08-24
Type: Package
Title: Count summarization and normalization for RNA-Seq data.
Author: Nicolas Delhomme, Ismael Padioleau
Maintainer: Nicolas Delhomme <delhomme@embl.de>
Description: Calculates the coverage of high-throughput short-reads against 
	     a genome of reference and summarizes it per feature of interest (e.g. exon, 
	     gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq' 
	     or 'edgeR' package.
Depends: graphics, methods, parallel, utils, genomeIntervals (>=
        1.12.0), Biobase (>= 2.16.0), BiocGenerics (>= 0.2.0), biomaRt
        (>= 2.12.0), edgeR (>= 2.6.10), Biostrings (>= 2.24.1),
        BSgenome (>= 1.24.0), DESeq (>= 1.8.3), GenomicRanges (>=
        1.8.12), IRanges (>= 1.14.4), Rsamtools (>= 1.8.6), ShortRead
        (>= 1.14.4)
Suggests: BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.3.17), GenomicFeatures
        (>= 1.8.2), RnaSeqTutorial (>= 0.0.8)
License: Artistic-2.0
LazyLoad: yes
Enhances: edgeR, genomeIntervals, DESeq, ShortRead
biocViews: GeneExpression, RNAseq, Genetics, Preprocessing
Packaged: 2012-08-27 06:41:43 UTC; biocbuild
Built: R 2.15.1; ; 2012-08-27 10:48:08 UTC; windows
