Package: deepSNV
Imports: Rsamtools
Maintainer: Moritz Gerstung <gemoritz@ethz.ch>
License: GPL-3
Title: Test for subclonal SNVs in deep sequencing experiments.
BiocViews: GeneticVariability, SNP, Sequencing, Genetics, DataImport
LinkingTo: Rsamtools
Type: Package
LazyLoad: yes
Author: Moritz Gerstung and Niko Beerenwinkel
Description: This package provides provides a quantitative variant
    caller for detecting subclonal mutations in ultra-deep (>=100x
    coverage) sequencing experiments. It assumes a comparative setup
    with a control experiment of the same loci and a beta-binomial
    model to discriminate sequencing errors and subclonal SNVs.
Version: 1.2.3
URL: http://www.cbg.ethz.ch/software/deepSNV
Depends: R (>= 2.13.0), Rsamtools (>= 1.4.3), GenomicRanges, IRanges,
        Biostrings, VGAM, methods, graphics
Collate: 'deepSNV-class.R' 'deepSNV-experimental.R'
        'deepSNV-functions.R' 'deepSNV-generics.R' 'deepSNV-methods.R'
        'deepSNV-misc.R' 'deepSNV-package.R'
Packaged: 2012-04-14 05:52:29 UTC; biocbuild
Built: R 2.15.0; i386-pc-mingw32; 2012-04-14 09:48:24 UTC; windows
Archs: i386, x64
