Package: crlmm
Type: Package
Title: Genotype Calling (CRLMM) and Copy Number Analysis tool for
        Affymetrix SNP 5.0 and 6.0 and Illumina arrays.
Version: 1.14.3
Author: Benilton S Carvalho, Robert Scharpf, Matt Ritchie, Ingo Ruczinski, Rafael A Irizarry
Maintainer: Benilton S Carvalho <Benilton.Carvalho@cancer.org.uk>,
        Robert Scharpf <rscharpf@jhsph.edu>, Matt Ritchie
        <mritchie@wehi.EDU.AU>
Description: Faster implementation of CRLMM specific to SNP 5.0 and 6.0 arrays, as well as a copy number tool specific to 5.0, 6.0, and Illumina platforms
License: Artistic-2.0
Depends: R (>= 2.14.0), oligoClasses (>= 1.18.0)
Imports: methods, Biobase (>= 2.15.4), BiocGenerics, affyio (>=
        1.23.2), ellipse, genefilter (>= 1.37.1), mvtnorm,
        preprocessCore (>= 1.17.7), splines, stats, SNPchip, utils,
        lattice, ff, foreach
Suggests: hapmapsnp6, genomewidesnp6Crlmm (>= 1.0.4), GGdata, snpStats,
        ellipse, RUnit
Collate: AllGenerics.R AllClasses.R methods-AssayData.R methods-CNSet.R
        methods-CNSetLM.R methods-eSet.R methods-SnpSuperSet.R
        methods-PredictionRegion.R cnrma-functions.R cnset-accessors.R
        crlmm-functions.R crlmmGT2.R crlmm-illumina.R
        snprma-functions.R utils.R zzz.R test_crlmm_package.R
LazyLoad: yes
biocViews: Microarray, Preprocessing, SNP, Bioinformatics,
        CopyNumberVariants
Packaged: 2012-07-02 05:48:30 UTC; biocbuild
Built: R 2.15.1; i386-pc-mingw32; 2012-07-02 10:22:40 UTC; windows
Archs: i386, x64
