crlmm-package	crlmm-package
ABpanel	ABpanel
CA	copynumberAccessors
CA,CNSet-method	CNSet-methods
calculateRBaf	calculateRBaf
calculateRBaf,CNSet-method	calculateRBaf
CB	copynumberAccessors
CB,CNSet-method	CNSet-methods
celDates	celfile-utils
cnSetExample	cnSetExample
cnSetExample2	cnSetExample
coerce,CNSet,oligoSnpSet-method	CNSet-methods
constructInf	constructInf
corr	batchStatisticAccessors
corr,AssayData-method	AssayData-methods
corr,CNSet-method	CNSet-methods
crlmm	crlmm
crlmm2	crlmm
crlmmCopynumber	crlmmCopynumber
crlmmCopynumber2	crlmmCopynumber
crlmmCopynumberLD	crlmmCopynumber
crlmmIllumina	crlmmIllumina
crlmmIlluminaV2	crlmmIlluminaV2
genotype	genotype
genotype.Illumina	genotype.Illumina
genotype2	genotype
genotypeInf	genotypeInf
genotypeLD	genotype
genotypes	genotypes
lines,CNSet-method	CNSet-methods
mads	batchStatisticAccessors
mads,AssayData-method	AssayData-methods
mads,CNSet-method	CNSet-methods
medians	batchStatisticAccessors
medians,AssayData-method	AssayData-methods
medians,CNSet-method	CNSet-methods
Ns	batchStatisticAccessors
Ns,AssayData-method	AssayData-methods
Ns,CNSet-method	CNSet-methods
nuA	copynumberAccessors
nuA,CNSet-method	CNSet-methods
nuB	copynumberAccessors
nuB,CNSet-method	CNSet-methods
phiA	copynumberAccessors
phiA,CNSet-method	CNSet-methods
phiB	copynumberAccessors
phiB,CNSet-method	CNSet-methods
posteriorProbability	posteriorProbability
posteriorProbability,CNSet-method	posteriorProbability
predictionRegion	predictionRegion
predictionRegion,CNSet,integer-method	predictionRegion
PredictionRegion-class	PredictionRegion-class
preprocessInf	preprocessInf
rawCopynumber	copynumberAccessors
rawCopynumber,CNSet-method	CNSet-methods
readGenCallOutput	readGenCallOutput
readIDAT	readIDAT
readIdatFiles	readIdatFiles
readIdatFiles2	readIdatFiles
snprma	snprma
snprma2	snprma
tau2	batchStatisticAccessors
tau2,AssayData-method	AssayData-methods
tau2,CNSet-method	CNSet-methods
totalCopynumber	copynumberAccessors
totalCopynumber,CNSet-method	CNSet-methods
validCEL	celfile-utils
xyplot	xyplot
xyplot,formula,CNSet-method	xyplot
[,PredictionRegion-method	PredictionRegion-class
