biovizBase-package	biovizBase-package
addStepping	addStepping-method
addStepping,GenomicRanges-method	addStepping-method
biovizBase	biovizBase-package
blind.pal.info	colorBlindSafePal
brewer.pal.blind.info	colorBlindSafePal
colorBlindSafePal	colorBlindSafePal
containLetters	containLetters
crc1.GeRL	crc1.GeRL
darned_hg19_subset500	darned_hg19_subset500
dichromat.pal.blind.info	colorBlindSafePal
estimateCoverage	estimateCoverage-method
estimateCoverage,BamFile-method	estimateCoverage-method
flatGrl	flatGrl
GCcontent	GCcontent
genBlindPalInfo	colorBlindSafePal
genBrewerBlindPalInfo	colorBlindSafePal
genDichromatPalInfo	colorBlindSafePal
genesymbol	genesymbol
getBioColor	getBioColor
getFormalNames	getFormalNames
getGaps	getGaps
getGaps,GRanges-method	getGaps
getIdeoGR	getIdeoGR
getIdeogram	getIdeogram
getScale	getScale
getXLab	labs
getXLab,GappedAlignments-method	labs
getXLab,GRanges-method	labs
getXLab,GRangesList-method	labs
getXLab-method	labs
getXScale	scale
getXScale,GRanges-method	scale
getYLab	labs
getYLab,TranscriptDb-method	labs
hg19Ideogram	hg19Ideogram
hg19IdeogramCyto	hg19IdeogramCyto
isIdeogram	isIdeogram
isJunctionRead	isMatchedWithModel
isMatchedWithModel	isMatchedWithModel
isSimpleIdeogram	isSimpleIdeogram
is_coord_genome	transform
is_coord_truncate_gaps	shrinkageFun-method
maxGap	maxGap-method
maxGap,GenomicRanges-method	maxGap-method
parseArgsForAes	aes-utils
parseArgsForNonAes	aes-utils
pileupAsGRanges	pileupAsGRanges
pileupGRangesAsVariantTable	pileupGRangesAsVariantTable
plotColorLegend	plotColorLegend
showColor	showColor
shrinkageFun	shrinkageFun-method
shrinkageFun,GenomicRanges-method	shrinkageFun-method
shrinkageFun,IRanges-method	shrinkageFun-method
splitByFacets	splitByFacets-method
splitByFacets,GRanges,formula-method	splitByFacets-method
splitByFacets,GRanges,GRanges-method	splitByFacets-method
splitByFacets,GRanges,missing-method	splitByFacets-method
splitByFacets,GRanges,NULL-method	splitByFacets-method
strip_formula_dots	strip_formula_dots
subsetArgsByFormals	subsetArgsByFormals
transformDfToGr	transform
transformGRangesForEvenSpace	transformGRangesForEvenSpace
transformToArch	transform
transformToArch,GRanges-method	transform
transformToBarInCircle	transform
transformToCircle	transform
transformToDf	transform
transformToDf,GRanges-method	transform
transformToDf-method	transform
transformToGenome	transform
transformToGenome,GRanges-method	transform
transformToGenome,GRangesList-method	transform
transformToLinkInCircle	transform
transformToRectInCircle	transform
transformToSegInCircle	transform
