MEDIPS-package	MEDIPS-package
bin_size	MEDIPSset-class
bin_size,MEDIPSset-method	MEDIPSset-class
calcurve_mean_coupling	MEDIPSset-class
calcurve_mean_coupling,MEDIPSset-method	MEDIPSset-class
calcurve_mean_signals	MEDIPSset-class
calcurve_mean_signals,MEDIPSset-method	MEDIPSset-class
calcurve_var	MEDIPSset-class
calcurve_var,MEDIPSset-method	MEDIPSset-class
cali_chr	MEDIPSset-class
cali_chr,MEDIPSset-method	MEDIPSset-class
chr_lengths	MEDIPSset-class
chr_lengths,MEDIPSset-method	MEDIPSset-class
chr_names	MEDIPSset-class
chr_names,MEDIPSset-method	MEDIPSset-class
distFile	MEDIPSset-class
distFile,MEDIPSset-method	MEDIPSset-class
distFunction	MEDIPSset-class
distFunction,MEDIPSset-method	MEDIPSset-class
extend	MEDIPSset-class
extend,MEDIPSset-method	MEDIPSset-class
fragmentLength	MEDIPSset-class
fragmentLength,MEDIPSset-method	MEDIPSset-class
genome_CF	MEDIPSset-class
genome_CF,MEDIPSset-method	MEDIPSset-class
genome_chr	MEDIPSset-class
genome_chr,MEDIPSset-method	MEDIPSset-class
genome_name	MEDIPSset-class
genome_name,MEDIPSset-method	MEDIPSset-class
genome_norm	MEDIPSset-class
genome_norm,MEDIPSset-method	MEDIPSset-class
genome_pos	MEDIPSset-class
genome_pos,MEDIPSset-method	MEDIPSset-class
genome_raw	MEDIPSset-class
genome_raw,MEDIPSset-method	MEDIPSset-class
intercept	MEDIPSset-class
intercept,MEDIPSset-method	MEDIPSset-class
MEDIPS	MEDIPS-package
MEDIPS.annotate	MEDIPS.annotate
MEDIPS.calibrationCurve	MEDIPS.calibrationCurve
MEDIPS.couplingVector	MEDIPS.couplingVector
MEDIPS.coverageAnalysis	MEDIPS.coverageAnalysis
MEDIPS.CpGenrich	MEDIPS.CpGenrich
MEDIPS.distributeReads	MEDIPSset-class
MEDIPS.exportWIG	MEDIPS.exportWIG
MEDIPS.genomeVector	MEDIPS.genomeVector
MEDIPS.getPositions	MEDIPS.getPositions
MEDIPS.mergeFrames	MEDIPS.mergeFrames
MEDIPS.methylProfiling	MEDIPS.methylProfiling
MEDIPS.normalize	MEDIPS.normalize
MEDIPS.plotCalibrationPlot	MEDIPS.plotCalibrationPlot
MEDIPS.plotCoverage	MEDIPS.plotCoverage
MEDIPS.plotSaturation	MEDIPS.plotSaturation
MEDIPS.readAlignedSequences	MEDIPS.readAlignedSequences
MEDIPS.saturationAnalysis	MEDIPS.saturationAnalysis
MEDIPS.selectSignificants	MEDIPS.selectSignificants
MEDIPS.transform	MEDIPSset-class
MEDIPSset-class	MEDIPSset-class
number_pattern	MEDIPSset-class
number_pattern,MEDIPSset-method	MEDIPSset-class
number_regions	MEDIPSset-class
number_regions,MEDIPSset-method	MEDIPSset-class
pattern_chr	MEDIPSset-class
pattern_chr,MEDIPSset-method	MEDIPSset-class
pattern_pos	MEDIPSset-class
pattern_pos,MEDIPSset-method	MEDIPSset-class
regions_chr	MEDIPSset-class
regions_chr,MEDIPSset-method	MEDIPSset-class
regions_start	MEDIPSset-class
regions_start,MEDIPSset-method	MEDIPSset-class
regions_stop	MEDIPSset-class
regions_stop,MEDIPSset-method	MEDIPSset-class
regions_strand	MEDIPSset-class
regions_strand,MEDIPSset-method	MEDIPSset-class
sample_name	MEDIPSset-class
sample_name,MEDIPSset-method	MEDIPSset-class
seq_pattern	MEDIPSset-class
seq_pattern,MEDIPSset-method	MEDIPSset-class
show	MEDIPSset-class
show,MEDIPSset-method	MEDIPSset-class
slope	MEDIPSset-class
slope,MEDIPSset-method	MEDIPSset-class
