# Analyze, manage and store genomic data

## Documentation for package ‘Genominator’ version 1.10.0

- DESCRIPTION file.
- Overview of user guides and package vignettes; browse directory.
- Package NEWS.

## Help Pages

Genominator-package | Data backend for Genomic data
$-method | Class "ExpData"
addPrimingWeights | Adding priming weights to an AlignedRead object.
aggregateExpData | Collapse data into unique entries
applyMapped | Apply a function over mapped data.
chr1_yeast | Example datasets from Genominator
collapseExpData | Combine multiple data sets
computeCoverage | Compute effort-coverage values
computePrimingWeights | Compute weights to correct for random hexamer priming.
ExpData | Class "ExpData"
ExpData-class | Class "ExpData"
Genominator | Data backend for Genomic data
getColnames | Class "ExpData"
getDBConnection | Class "ExpData"
getDBFilename | Class "ExpData"
getIndexColumns | Class "ExpData"
getMode | Class "ExpData"
getRegion | Select a region from an ExpData object.
getSchema | Class "ExpData"
getTablename | Class "ExpData"
head-method | Class "ExpData"
importFromAlignedReads | Import aligned reads to database
importToExpData | Import data to database
initialize-method | Class "ExpData"
joinExpData | Merge ExpData objects
listTables | Class "ExpData"
makeGeneRepresentation | Compute a gene representation from annotation.
mergeWithAnnotation | Combine data with annotation
plot.genominator.coverage | Create coverage plot
plot.genominator.goodness.of.fit | Create goodness-of-fit quantile-quantile plot
regionGoodnessOfFit | Calculate goodness-of-fit statistics
regionGoodnessOfFit-method | Calculate goodness-of-fit statistics
regionGoodnessOfFit-methods | Calculate goodness-of-fit statistics
show-method | Class "ExpData"
splitByAnnotation | Split data into a list by annotation element.
summarizeByAnnotation | Summarize data based on genome annotation.
summarizeExpData | Summarize a data column
validAnnotation | Check for validity of a annotation object.
yeastAnno | Example datasets from Genominator
yeastAnno.sources | Example datasets from Genominator
[-method | Class "ExpData"