GGtools-package         software and data for analyses in genetics of
                        gene expression
best.cis.eQTLs          collect genewise best scoring eQTL
eqtlTests               compute association statistics between all
                        probes and SNP in an smlSet instance
eqtlTestsManager-class
                        Class '"eqtlTestsManager"'
ex                      ExpressionSet instance for illustrating
                        integrative smlSet container
getCisMap               create, using Bioconductor annotation
                        resources, a structure that enumerates SNP in
                        the vicinity of ('cis' to) genes
gwSnpTests              execute a series of tests for association
                        between genotype and expression
strMultPop              serialization of a table from Stranger's
                        multipopulation eQTL report
transManager-class      Class '"transManager"'
transScores             obtain the top trans associations for each SNP
                        in an smlSet
transTab                tabulate results of transScores run
vcf2sm                  generate a SnpMatrix instance on the basis of a
                        VCF (4.0) file
