DEGexp                  DEGexp: Identifying Differentially Expressed
                        Genes from gene expression data
DEGexp2                 DEGexp2: Identifying Differentially Expressed
                        Genes from gene expression data
DEGseq                  DEGseq: Identify Differentially Expressed Genes
                        from RNA-seq data
GeneExpExample1000      GeneExpExample1000
GeneExpExample5000      GeneExpExample5000
getGeneExp              getGeneExp: Count the number of reads and
                        calculate the RPKM for each gene
kidneyChr21.bed         kidneyChr21.bed
kidneyChr21Bowtie       kidneyChr21Bowtie
liverChr21.bed          liverChr21.bed
liverChr21Bowtie        liverChr21Bowtie
readGeneExp             readGeneExp: read gene expression values to a
                        matrix
refFlatChr21            refFlatChr21
samWrapper              samWrapper: A Wrapper (with some modification)
                        of the functions in the package samr to
                        identify differentially expressed genes for the
                        RNA-seq data from two groups of paired or
                        unpaired samples.
